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LOC7480481 oxygen-evolving enhancer protein 1, chloroplastic [ Populus trichocarpa (black cottonwood) ]

Gene ID: 7480481, updated on 23-Nov-2023

Summary

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Gene symbol
LOC7480481
Gene description
oxygen-evolving enhancer protein 1, chloroplastic
Locus tag
POPTR_005G130400v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Populus trichocarpa
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Genomic context

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See LOC7480481 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
2
Annotation release Status Assembly Chr Location
102 current P.trichocarpa_v4.1 (GCF_000002775.5) 5 NC_037289.2 (10008790..10010532, complement)
101 previous assembly Pop_tri_v3 (GCF_000002775.4) 5 NC_037289.1 (10468205..10470007, complement)

Chromosome 5 - NC_037289.2Genomic Context describing neighboring genes Neighboring gene STS14 protein Neighboring gene uncharacterized LOC7480479 Neighboring gene transfer RNA isoleucine (anticodon AAU) Neighboring gene small nucleolar RNA Z105 Neighboring gene uncharacterized LOC18099352

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Analysis of 4,664 high-quality sequence-finished poplar full-length cDNA clones and their utility for the discovery of genes responding to insect feeding. Ralph SG, et al. BMC Genomics, 2008 Jan 29. PMID 18230180, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables oxygen evolving activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in photosystem II assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in photosystem II stabilization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of photosystem II oxygen evolving complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
oxygen-evolving enhancer protein 1, chloroplastic

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Populus trichocarpa Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P.trichocarpa_v4.1 Primary Assembly

Genomic

  1. NC_037289.2 Reference P.trichocarpa_v4.1 Primary Assembly

    Range
    10008790..10010532 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002307198.4 → XP_002307234.1  oxygen-evolving enhancer protein 1, chloroplastic

    See identical proteins and their annotated locations for XP_002307234.1

    UniProtKB/TrEMBL
    A9PHA9
    Conserved Domains (1) summary
    PLN00037
    Location:19 → 331
    PLN00037; photosystem II oxygen-evolving enhancer protein 1; Provisional
Nucleotide Protein
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