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LOC7476880 tryptophan synthase alpha chain [ Populus trichocarpa (black cottonwood) ]

Gene ID: 7476880, updated on 23-Nov-2023

Summary

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Gene symbol
LOC7476880
Gene description
tryptophan synthase alpha chain
Locus tag
POPTR_005G217700v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Populus trichocarpa
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Genomic context

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See LOC7476880 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
9
Annotation release Status Assembly Chr Location
102 current P.trichocarpa_v4.1 (GCF_000002775.5) 5 NC_037289.2 (22064938..22068130, complement)
101 previous assembly Pop_tri_v3 (GCF_000002775.4) 5 NC_037289.1 (23020579..23023844, complement)

Chromosome 5 - NC_037289.2Genomic Context describing neighboring genes Neighboring gene light-inducible protein CPRF2 Neighboring gene V-type proton ATPase subunit F Neighboring gene transcription factor UNE12 Neighboring gene NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial Neighboring gene protein OSB2, chloroplastic

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables tryptophan synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in tryptophan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tryptophan synthase alpha chain

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Populus trichocarpa Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P.trichocarpa_v4.1 Primary Assembly

Genomic

  1. NC_037289.2 Reference P.trichocarpa_v4.1 Primary Assembly

    Range
    22064938..22068130 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002307587.4 → XP_002307623.1  tryptophan synthase alpha chain

    See identical proteins and their annotated locations for XP_002307623.1

    UniProtKB/TrEMBL
    B9H8G5, U5GKN4
    Conserved Domains (1) summary
    PLN02591
    Location:61 → 310
    PLN02591; tryptophan synthase
Nucleotide Protein
Heading Accession and Version

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