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LOC7461830 ubiquitin-fold modifier-conjugating enzyme 1 [ Populus trichocarpa (black cottonwood) ]

Gene ID: 7461830, updated on 23-Nov-2023

Summary

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Gene symbol
LOC7461830
Gene description
ubiquitin-fold modifier-conjugating enzyme 1
Locus tag
POPTR_002G107600v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Populus trichocarpa
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Genomic context

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See LOC7461830 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
3
Annotation release Status Assembly Chr Location
102 current P.trichocarpa_v4.1 (GCF_000002775.5) 2 NC_037286.2 (7995272..7997125)
101 previous assembly Pop_tri_v3 (GCF_000002775.4) 2 NC_037286.1 (7891477..7893229)

Chromosome 2 - NC_037286.2Genomic Context describing neighboring genes Neighboring gene probable beta-1,4-xylosyltransferase IRX9H Neighboring gene uncharacterized LOC7467209 Neighboring gene phosphoenolpyruvate carboxykinase (ATP) Neighboring gene glutamyl-tRNA reductase 1, chloroplastic

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Analysis of 4,664 high-quality sequence-finished poplar full-length cDNA clones and their utility for the discovery of genes responding to insect feeding. Ralph SG, et al. BMC Genomics, 2008 Jan 29. PMID 18230180, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables UFM1 conjugating enzyme activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein K69-linked ufmylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ubiquitin-fold modifier-conjugating enzyme 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Populus trichocarpa Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P.trichocarpa_v4.1 Primary Assembly

Genomic

  1. NC_037286.2 Reference P.trichocarpa_v4.1 Primary Assembly

    Range
    7995272..7997125
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002301068.3 → XP_002301104.1  ubiquitin-fold modifier-conjugating enzyme 1

    See identical proteins and their annotated locations for XP_002301104.1

    UniProtKB/TrEMBL
    A9PCY0
    Conserved Domains (1) summary
    pfam08694
    Location:8 → 163
    UFC1; Ubiquitin-fold modifier-conjugating enzyme 1

  2. XM_052450539.1 → XP_052306499.1  ubiquitin-fold modifier-conjugating enzyme 1

    UniProtKB/TrEMBL
    A9PCY0
Nucleotide Protein
Heading Accession and Version

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