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THAPSDRAFT_832 hypothetical protein [ Thalassiosira pseudonana CCMP1335 ]

Gene ID: 7443334, updated on 21-Dec-2023

Summary

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Gene symbol
THAPSDRAFT_832
Gene description
hypothetical protein
Locus tag
THAPSDRAFT_832
Gene type
protein coding
RNA name
predicted protein
RefSeq status
PROVISIONAL
Organism
Thalassiosira pseudonana CCMP1335 (strain: CCMP1335)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira
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Genomic context

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See THAPSDRAFT_832 in Genome Data Viewer
Location:
chromosome: 20
Exon count:
1
Sequence:
Chromosome: 20; NC_012083.1 (186768..187889)

Chromosome 20 - NC_012083.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene NAD or nadp-dependent reductase Neighboring gene phosphatidylinositol phosphatase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012083.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Armbrust EV, et al. Science, 2004 Oct 1. PMID 15459382
  2. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
hypothetical protein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012083.1 Reference assembly

    Range
    186768..187889
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002294529.1 → XP_002294565.1  predicted protein [Thalassiosira pseudonana CCMP1335]

    See identical proteins and their annotated locations for XP_002294565.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B8CEM1
    Conserved Domains (1) summary
    pfam03690
    Location:30 → 366
    UPF0160; uncharacterized protein family (UPF0160)
Nucleotide Protein
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