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rpmE 50S ribosomal protein L31 [ Longicatena caecimuris ]

Gene ID: 73794450, updated on 6-Oct-2023

Summary

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Gene symbol
rpmE
Gene description
50S ribosomal protein L31
Locus tag
KJS44_RS01270
Gene type
protein coding
Organism
Longicatena caecimuris (strain: 3BBH23, nat-host: Homo sapiens)
Lineage
Bacteria; Bacillota; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Longicatena
Old locus tag
L3BBH23_02550
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Genomic context

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NZ_AP024510.1Genomic Context describing neighboring genes Neighboring gene GntR family transcriptional regulator Neighboring gene ABC transporter ATP-binding protein Neighboring gene ABC transporter permease Neighboring gene thymidine kinase Neighboring gene IS1634 family transposase

Genomic regions, transcripts, and products

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Genomic Sequence:
NZ_AP024510.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Liberation of zinc-containing L31 (RpmE) from ribosomes by its paralogous gene product, YtiA, in Bacillus subtilis. Akanuma G, et al. J Bacteriol, 2006 Apr. PMID 16547061, Free PMC Article
  2. Complete Genome Sequence of Longicatena caecimuris Strain 3BBH23, Isolated from Healthy Japanese Feces. Ogata Y, et al. Microbiol Resour Announc, 2021 May 20. PMID 34016676, Free PMC Article
  3. Two C or not two C: recurrent disruption of Zn-ribbons, gene duplication, lineage-specific gene loss, and horizontal gene transfer in evolution of bacterial ribosomal proteins. Makarova KS, et al. Genome Biol, 2001. PMID 11574053, Free PMC Article
  4. Zinc is a key factor in controlling alternation of two types of L31 protein in the Bacillus subtilis ribosome. Nanamiya H, et al. Mol Microbiol, 2004 Apr. PMID 15049826

GeneRIFs: Gene References Into Functions

General protein information

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Preferred Names
50S ribosomal protein L31

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NZ_AP024510.1 Reference assembly

    Range
    266863..267066
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. WP_008691228.1 MULTISPECIES: 50S ribosomal protein L31 [Longicatena]

    See identical proteins and their annotated locations for WP_008691228.1

    UniProtKB/TrEMBL
    A0A1C5YED6, A0A372YRA9, A0A4R3T0W0, U5F9X6
    Conserved Domains (1) summary
    pfam01197
    Location:1 → 65
    Ribosomal_L31; Ribosomal protein L31
Nucleotide Protein
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