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Lce1l late cornified envelope 1L [ Mus musculus (house mouse) ]

Gene ID: 73730, updated on 27-Nov-2024

Summary

Official Symbol
Lce1lprovided by MGI
Official Full Name
late cornified envelope 1Lprovided by MGI
Primary source
MGI:MGI:1920980
See related
Ensembl:ENSMUSG00000046676 AllianceGenome:MGI:1920980
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
1110008K04Rik
Summary
Predicted to enable identical protein binding activity. Orthologous to several human genes including LCE1A (late cornified envelope 1A); LCE1B (late cornified envelope 1B); and LCE1C (late cornified envelope 1C). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Restricted expression toward stomach adult (RPKM 31.2) See more
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Genomic context

See Lce1l in Genome Data Viewer
Location:
3 F1; 3 40.14 cM
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 3 NC_000069.7 (92757256..92758593, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 3 NC_000069.6 (92849949..92851286, complement)

Chromosome 3 - NC_000069.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_08315 Neighboring gene late cornified envelope 1K Neighboring gene keratinocyte expressed, proline-rich Neighboring gene STARR-seq mESC enhancer starr_08316 Neighboring gene KPRP N-terminal and LCE C-terminal like protein Neighboring gene late cornified envelope 3A

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (2) 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_028628.2NP_082904.1  late cornified envelope 1L

    See identical proteins and their annotated locations for NP_082904.1

    Status: PROVISIONAL

    Source sequence(s)
    AK003585
    Consensus CDS
    CCDS38518.1
    UniProtKB/TrEMBL
    Q9D1G7
    Related
    ENSMUSP00000057762.5, ENSMUST00000054426.5

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000069.7 Reference GRCm39 C57BL/6J

    Range
    92757256..92758593 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)