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phyhdlb.L probable alpha-ketoglutarate-dependent hypophosphite dioxygenase-like gene B L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 734609, updated on 4-Jan-2025

Summary

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Official Symbol
phyhdlb.L
Official Full Name
probable alpha-ketoglutarate-dependent hypophosphite dioxygenase-like gene B L homeolog
Primary source
Xenbase:XB-GENE-5792896
Locus tag
XELAEV_18038704mg
See related
EnsemblRapid:ENSXLAG00005014424 AllianceGenome:Xenbase:XB-GENE-5792896
Gene type
protein coding
RefSeq status
PREDICTED
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
orga04; LOC100490918.L
Summary
Is expressed in dermal system and ectoderm. [provided by Alliance of Genome Resources, Jan 2025]
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Genomic context

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See phyhdlb.L in Genome Data Viewer
Location:
chromosome: 8L
Exon count:
6
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 8L NC_054385.1 (36557746..36560388)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 8L NC_030738.1 (23411312..23413954)

Chromosome 8L - NC_054385.1Genomic Context describing neighboring genes Neighboring gene succinate-acetate transporter protein gene b L homeolog Neighboring gene uncharacterized LOC121397016 Neighboring gene glutamine amidotransferase like class 1 domain containing 3A-like gene b1 L homeolog Neighboring gene aconitate decarboxylase 1 like gene b L homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. An atlas of differential gene expression during early Xenopus embryogenesis. Pollet N, et al. Mech Dev, 2005 Mar. PMID 15763213
  2. Axeldb: a Xenopus laevis database focusing on gene expression. Pollet N, et al. Nucleic Acids Res, 2000 Jan 1. PMID 10592204, Free PMC Article
  3. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC115642

General protein information

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Preferred Names
uncharacterized protein LOC734609
Names
probable alpha-ketoglutarate-dependent hypophosphite dioxygenase-like L homeolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001096084.1 → NP_001089553.1  uncharacterized protein LOC734609

    See identical proteins and their annotated locations for NP_001089553.1

    Status: PREDICTED

    Source sequence(s)
    BC097873
    UniProtKB/TrEMBL
    A0A974C6F8, Q4V7J5
    Related
    ENSXLAP00005042218.1, ENSXLAT00005043284.1
    Conserved Domains (1) summary
    cl21496
    Location:12 → 212
    2OG-FeII_Oxy; 2OG-Fe(II) oxygenase superfamily

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054385.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    36557746..36560388
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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