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ADARB1 adenosine deaminase RNA specific B1 [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 722016, updated on 17-Aug-2024

Summary

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Official Symbol
ADARB1provided by VGNC
Official Full Name
adenosine deaminase RNA specific B1provided by VGNC
Primary source
VGNC:VGNC:69503
Locus tag
EGK_13170
See related
Ensembl:ENSMMUG00000010695
Gene type
protein coding
RefSeq status
MODEL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
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Genomic context

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See ADARB1 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
14
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 3 NC_041756.1 (1504920..1641282, complement)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 3 NC_027895.1 (1498640..1580954, complement)

Chromosome 3 - NC_041756.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC114676787 Neighboring gene uncharacterized LOC114676788 Neighboring gene uncharacterized LOC106997216 Neighboring gene SLX9 ribosome biogenesis factor

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables double-stranded RNA adenosine deaminase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables double-stranded RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables tRNA-specific adenosine deaminase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in RNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in adenosine to inosine editing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
double-stranded RNA-specific editase 1
Names
adenosine deaminase, RNA-specific, B1 (RED1 homolog rat)
XP_002803150.2
XP_014988212.1
XP_014988214.2
XP_028701073.1
XP_028701074.1
XP_028701075.1
XP_028701076.1
XP_028701077.1
XP_028701078.1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041756.1 Reference Mmul_10 Primary Assembly

    Range
    1504920..1641282 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028845245.1 → XP_028701078.1  double-stranded RNA-specific editase 1 isoform X9

    UniProtKB/TrEMBL
    F7G963, F7G972
    Related
    ENSMMUP00000014016.3, ENSMMUT00000014961.4
    Conserved Domains (3) summary
    smart00552
    Location:322 → 698
    ADEAMc; tRNA-specific and double-stranded RNA adenosine deaminase (RNA-specific editase)
    cd19895
    Location:75 → 146
    DSRM_RED1_rpt1; first double-stranded RNA binding motif of RNA-editing deaminase 1 (RED1) and similar proteins
    cd19898
    Location:232 → 301
    DSRM_RED1_rpt2; second double-stranded RNA binding motif of RNA-editing deaminase 1 (RED1) and similar proteins

  2. XM_028845244.1 → XP_028701077.1  double-stranded RNA-specific editase 1 isoform X7

    UniProtKB/TrEMBL
    A0A663DEP4, A0A8J8XLD3, F7G972, F7G976, G7MMG3
    Related
    ENSMMUP00000014013.3, ENSMMUT00000014958.4
    Conserved Domains (3) summary
    smart00552
    Location:322 → 738
    ADEAMc; tRNA-specific and double-stranded RNA adenosine deaminase (RNA-specific editase)
    cd19895
    Location:75 → 146
    DSRM_RED1_rpt1; first double-stranded RNA binding motif of RNA-editing deaminase 1 (RED1) and similar proteins
    cd19898
    Location:232 → 301
    DSRM_RED1_rpt2; second double-stranded RNA binding motif of RNA-editing deaminase 1 (RED1) and similar proteins

  3. XM_028845242.1 → XP_028701075.1  double-stranded RNA-specific editase 1 isoform X4

    UniProtKB/TrEMBL
    A0A1D5QUE4
    Conserved Domains (3) summary
    smart00552
    Location:334 → 750
    ADEAMc; tRNA-specific and double-stranded RNA adenosine deaminase (RNA-specific editase)
    cd19895
    Location:87 → 158
    DSRM_RED1_rpt1; first double-stranded RNA binding motif of RNA-editing deaminase 1 (RED1) and similar proteins
    cd19898
    Location:244 → 313
    DSRM_RED1_rpt2; second double-stranded RNA binding motif of RNA-editing deaminase 1 (RED1) and similar proteins

  4. XM_028845240.1 → XP_028701073.1  double-stranded RNA-specific editase 1 isoform X1

    UniProtKB/TrEMBL
    A0A1D5QUE4
    Conserved Domains (2) summary
    cd00048
    Location:140 → 203
    DSRM; Double-stranded RNA binding motif. Binding is not sequence specific but is highly specific for double stranded RNA. Found in a variety of proteins including dsRNA dependent protein kinase PKR, RNA helicases, Drosophila staufen protein, E. coli RNase III, ...
    pfam02137
    Location:431 → 792
    A_deamin; Adenosine-deaminase (editase) domain

  5. XM_028845241.1 → XP_028701074.1  double-stranded RNA-specific editase 1 isoform X3

    UniProtKB/TrEMBL
    A0A1D5QUE4
    Conserved Domains (2) summary
    cd00048
    Location:140 → 203
    DSRM; Double-stranded RNA binding motif. Binding is not sequence specific but is highly specific for double stranded RNA. Found in a variety of proteins including dsRNA dependent protein kinase PKR, RNA helicases, Drosophila staufen protein, E. coli RNase III, ...
    pfam02137
    Location:431 → 752
    A_deamin; Adenosine-deaminase (editase) domain

  6. XM_015132726.2 → XP_014988212.1  double-stranded RNA-specific editase 1 isoform X2

    UniProtKB/TrEMBL
    A0A1D5QUE4
    Conserved Domains (3) summary
    smart00552
    Location:371 → 787
    ADEAMc; tRNA-specific and double-stranded RNA adenosine deaminase (RNA-specific editase)
    cd00048
    Location:128 → 191
    DSRM; Double-stranded RNA binding motif. Binding is not sequence specific but is highly specific for double stranded RNA. Found in a variety of proteins including dsRNA dependent protein kinase PKR, RNA helicases, Drosophila staufen protein, E. coli RNase III, ...
    pfam13900
    Location:519 → 545
    GVQW; Putative domain of unknown function

  7. XM_002803104.3 → XP_002803150.2  double-stranded RNA-specific editase 1 isoform X5

    UniProtKB/TrEMBL
    A0A1D5QUE4
    Conserved Domains (2) summary
    cd00048
    Location:128 → 191
    DSRM; Double-stranded RNA binding motif. Binding is not sequence specific but is highly specific for double stranded RNA. Found in a variety of proteins including dsRNA dependent protein kinase PKR, RNA helicases, Drosophila staufen protein, E. coli RNase III, ...
    pfam02137
    Location:419 → 740
    A_deamin; Adenosine-deaminase (editase) domain

  8. XM_028845243.1 → XP_028701076.1  double-stranded RNA-specific editase 1 isoform X6

    UniProtKB/TrEMBL
    F7G972
    Conserved Domains (2) summary
    cd00048
    Location:140 → 203
    DSRM; Double-stranded RNA binding motif. Binding is not sequence specific but is highly specific for double stranded RNA. Found in a variety of proteins including dsRNA dependent protein kinase PKR, RNA helicases, Drosophila staufen protein, E. coli RNase III, ...
    pfam02137
    Location:431 → 729
    A_deamin; Adenosine-deaminase (editase) domain

  9. XM_015132728.2 → XP_014988214.2  double-stranded RNA-specific editase 1 isoform X8

    UniProtKB/TrEMBL
    F7G972
    Conserved Domains (2) summary
    cd00048
    Location:128 → 191
    DSRM; Double-stranded RNA binding motif. Binding is not sequence specific but is highly specific for double stranded RNA. Found in a variety of proteins including dsRNA dependent protein kinase PKR, RNA helicases, Drosophila staufen protein, E. coli RNase III, ...
    pfam02137
    Location:419 → 717
    A_deamin; Adenosine-deaminase (editase) domain
Nucleotide Protein
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