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PDS5B PDS5 cohesin associated factor B [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 721999, updated on 17-Aug-2024

Summary

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Official Symbol
PDS5Bprovided by VGNC
Official Full Name
PDS5 cohesin associated factor Bprovided by VGNC
Primary source
VGNC:VGNC:75835
See related
Ensembl:ENSMMUG00000007201
Gene type
protein coding
RefSeq status
MODEL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
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Genomic context

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See PDS5B in Genome Data Viewer
Location:
chromosome: 17
Exon count:
35
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 17 NC_041770.1 (11578163..11767085)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 17 NC_027909.1 (12107097..12296445)

Chromosome 17 - NC_041770.1Genomic Context describing neighboring genes Neighboring gene NEDD4 binding protein 2 like 2 Neighboring gene MICOS complex subunit MIC10 pseudogene Neighboring gene uncharacterized LOC114673602 Neighboring gene 40S ribosomal protein S15a-like Neighboring gene uncharacterized LOC114673537 Neighboring gene uncharacterized LOC114673536

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in DNA repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mitotic sister chromatid cohesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of chromatin IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sister chromatid cohesion protein PDS5 homolog B
Names
PDS5, regulator of cohesion maintenance, homolog B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041770.1 Reference Mmul_10 Primary Assembly

    Range
    11578163..11767085
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015120858.2 → XP_014976344.1  sister chromatid cohesion protein PDS5 homolog B isoform X2

    UniProtKB/TrEMBL
    F7EQ66, H9FRM2, H9Z6N1
    Related
    ENSMMUP00000009451.4, ENSMMUT00000010067.4
    Conserved Domains (3) summary
    sd00044
    Location:240 → 261
    HEAT; HEAT repeat [structural motif]
    cl26789
    Location:250 → 461
    Toprim_N; DNA primase catalytic core, N-terminal domain
    cl27000
    Location:1175 → 1403
    TFIIFa; Transcription initiation factor IIF, alpha subunit, N-terminal region of RAP74. Subunit of transcription initiation complex involved in initiation, elongation and promoter escape.Tetramer of 2 alpha and 2 beta TFIIF subunits interacts directly with RNA ...

  2. XM_015120857.2 → XP_014976343.1  sister chromatid cohesion protein PDS5 homolog B isoform X1

    UniProtKB/TrEMBL
    H9FRM2
    Related
    ENSMMUP00000058666.2, ENSMMUT00000075268.2
    Conserved Domains (2) summary
    sd00044
    Location:240 → 261
    HEAT; HEAT repeat [structural motif]
    cd19953
    Location:31 → 661
    PDS5; Sister chromatid cohesion protein PDS5

  3. XM_015120861.2 → XP_014976347.1  sister chromatid cohesion protein PDS5 homolog B isoform X5

    UniProtKB/TrEMBL
    A0A5F8AJT7, H9FRM2
    Related
    ENSMMUP00000078184.1, ENSMMUT00000109436.1
    Conserved Domains (3) summary
    sd00044
    Location:240 → 261
    HEAT; HEAT repeat [structural motif]
    cl25751
    Location:1042 → 1295
    DUF4045; Domain of unknown function (DUF4045)
    cl26789
    Location:250 → 461
    Toprim_N; DNA primase catalytic core, N-terminal domain

  4. XM_015120859.2 → XP_014976345.1  sister chromatid cohesion protein PDS5 homolog B isoform X3

    UniProtKB/TrEMBL
    H9FRM2
    Conserved Domains (3) summary
    sd00044
    Location:240 → 261
    HEAT; HEAT repeat [structural motif]
    cl26789
    Location:250 → 461
    Toprim_N; DNA primase catalytic core, N-terminal domain
    cl27000
    Location:1175 → 1402
    TFIIFa; Transcription initiation factor IIF, alpha subunit, N-terminal region of RAP74. Subunit of transcription initiation complex involved in initiation, elongation and promoter escape.Tetramer of 2 alpha and 2 beta TFIIF subunits interacts directly with RNA ...

  5. XM_015120860.2 → XP_014976346.1  sister chromatid cohesion protein PDS5 homolog B isoform X4

    UniProtKB/TrEMBL
    H9FRM2, H9Z6N2
    Conserved Domains (3) summary
    sd00044
    Location:240 → 261
    HEAT; HEAT repeat [structural motif]
    cl26789
    Location:250 → 461
    Toprim_N; DNA primase catalytic core, N-terminal domain
    cl27000
    Location:1175 → 1401
    TFIIFa; Transcription initiation factor IIF, alpha subunit, N-terminal region of RAP74. Subunit of transcription initiation complex involved in initiation, elongation and promoter escape.Tetramer of 2 alpha and 2 beta TFIIF subunits interacts directly with RNA ...
Nucleotide Protein
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