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COL6A1 collagen type VI alpha 1 chain [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 721855, updated on 17-Aug-2024

Summary

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Official Symbol
COL6A1provided by VGNC
Official Full Name
collagen type VI alpha 1 chainprovided by VGNC
Primary source
VGNC:VGNC:82084
See related
Ensembl:ENSMMUG00000000544
Gene type
protein coding
RefSeq status
MODEL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
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Genomic context

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See COL6A1 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
35
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 3 NC_041756.1 (774273..796717, complement)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 3 NC_027895.1 (766507..788899, complement)

Chromosome 3 - NC_041756.1Genomic Context describing neighboring genes Neighboring gene formimidoyltransferase cyclodeaminase Neighboring gene collagen type VI alpha 2 chain Neighboring gene uncharacterized LOC114676696 Neighboring gene poly(rC) binding protein 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Elevated gene expression levels distinguish human from non-human primate brains. Cáceres M, et al. Proc Natl Acad Sci U S A, 2003 Oct 28. PMID 14557539, Free PMC Article
  2. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

General protein information

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Preferred Names
collagen alpha-1(VI) chain
Names
type IV collagen alpha 1 subunit

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041756.1 Reference Mmul_10 Primary Assembly

    Range
    774273..796717 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015132686.2 → XP_014988172.1  collagen alpha-1(VI) chain

    UniProtKB/TrEMBL
    F6ZXR6, H9Z5B0, I0FP93
    Related
    ENSMMUP00000000736.4, ENSMMUT00000000795.4
    Conserved Domains (2) summary
    pfam01391
    Location:257 → 315
    Collagen; Collagen triple helix repeat (20 copies)
    cd01480
    Location:826 → 1011
    vWA_collagen_alpha_1-VI-type; VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than ...
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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