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SYT12 synaptotagmin 12 [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 721773, updated on 17-Aug-2024

Summary

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Official Symbol
SYT12provided by VGNC
Official Full Name
synaptotagmin 12provided by VGNC
Primary source
VGNC:VGNC:78159
Locus tag
EGK_05949
See related
Ensembl:ENSMMUG00000011741
Gene type
protein coding
RefSeq status
MODEL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
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Genomic context

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See SYT12 in Genome Data Viewer
Location:
chromosome: 14
Exon count:
9
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 14 NC_041767.1 (7496852..7524796, complement)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 14 NC_027906.1 (7362172..7391150, complement)

Chromosome 14 - NC_041767.1Genomic Context describing neighboring genes Neighboring gene ras homolog family member D Neighboring gene uncharacterized LOC106993183 Neighboring gene chromosome 14 C11orf86 homolog Neighboring gene uncharacterized LOC114672121

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques. Yan G, et al. Nat Biotechnol, 2011 Oct 16. PMID 22002653
  2. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables SNARE binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium-dependent phospholipid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables clathrin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables phosphatidylserine binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in calcium-ion regulated exocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cellular response to calcium ion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of calcium ion-dependent exocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of dopamine secretion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
synaptotagmin-12
Names
synaptotagmin XII

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041767.1 Reference Mmul_10 Primary Assembly

    Range
    7496852..7524796 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028833180.1 → XP_028689013.1  synaptotagmin-12 isoform X1

    UniProtKB/TrEMBL
    A0A5F8AKX9, F7GWY8
    Related
    ENSMMUP00000077694.1, ENSMMUT00000091812.1
    Conserved Domains (2) summary
    cd08406
    Location:284 → 419
    C2B_Synaptotagmin-12; C2 domain second repeat present in Synaptotagmin 12
    cl14603
    Location:152 → 263
    C2; C2 domain

  2. XM_015113600.2 → XP_014969086.2  synaptotagmin-12 isoform X1

    UniProtKB/TrEMBL
    A0A5F8AKX9, F7GWY8
    Related
    ENSMMUP00000015405.3, ENSMMUT00000016444.4
    Conserved Domains (2) summary
    cd08406
    Location:284 → 419
    C2B_Synaptotagmin-12; C2 domain second repeat present in Synaptotagmin 12
    cl14603
    Location:152 → 263
    C2; C2 domain

  3. XM_028833181.1 → XP_028689014.1  synaptotagmin-12 isoform X2

    UniProtKB/TrEMBL
    H9F5Y3
    Conserved Domains (2) summary
    cd08406
    Location:169 → 304
    C2B_Synaptotagmin-12; C2 domain second repeat present in Synaptotagmin 12
    cl14603
    Location:37 → 148
    C2; C2 domain
Nucleotide Protein
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