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KDM5A lysine demethylase 5A [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 721599, updated on 17-Aug-2024

Summary

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Official Symbol
KDM5Aprovided by VGNC
Official Full Name
lysine demethylase 5Aprovided by VGNC
Primary source
VGNC:VGNC:82169
Locus tag
EGK_03218
See related
Ensembl:ENSMMUG00000013653
Gene type
protein coding
RefSeq status
MODEL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
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Genomic context

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See KDM5A in Genome Data Viewer
Location:
chromosome: 11
Exon count:
28
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 11 NC_041764.1 (291975..385788, complement)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 11 NC_027903.1 (280344..374121, complement)

Chromosome 11 - NC_041764.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 6 member 12 Neighboring gene solute carrier family 6 member 13 Neighboring gene uncharacterized LOC107000712 Neighboring gene coiled-coil domain containing 77 Neighboring gene uncharacterized LOC107000713

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables histone demethylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chromatin remodeling IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
lysine-specific demethylase 5A
XP_015006193.1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041764.1 Reference Mmul_10 Primary Assembly

    Range
    291975..385788 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015150707.2 → XP_015006193.1  lysine-specific demethylase 5A

    UniProtKB/TrEMBL
    A0A1D5QJK5, A0A663DC89, A0A8J8XBL2, G7N5C3, H9F9L0
    Related
    ENSMMUP00000055307.1, ENSMMUT00000059037.2
    Conserved Domains (8) summary
    smart00545
    Location:18 → 59
    JmjN; Small domain found in the jumonji family of transcription factors
    smart01014
    Location:85 → 170
    ARID; ARID/BRIGHT DNA binding domain
    pfam02373
    Location:470 → 586
    JmjC; JmjC domain, hydroxylase
    cd15602
    Location:295 → 343
    PHD1_KDM5A; PHD finger 1 found in Lysine-specific demethylase 5A (KDM5A)
    cd15606
    Location:1163 → 1215
    PHD2_KDM5A; PHD finger 2 found in Lysine-specific demethylase 5A (KDM5A)
    cd15686
    Location:1608 → 1659
    PHD3_KDM5A; PHD finger 3 found in Lysine-specific demethylase 5A (KDM5A)
    pfam02928
    Location:676 → 728
    zf-C5HC2; C5HC2 zinc finger
    pfam08429
    Location:741 → 1070
    PLU-1; PLU-1-like protein
Nucleotide Protein
Heading Accession and Version

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