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PHATRDRAFT_bd1239 hypothetical protein [ Phaeodactylum tricornutum CCAP 1055/1 ]

Gene ID: 7205166, updated on 21-Dec-2023

Summary

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Gene symbol
PHATRDRAFT_bd1239
Gene description
hypothetical protein
Locus tag
PHATRDRAFT_bd1239
Gene type
protein coding
RNA name
predicted protein
RefSeq status
PROVISIONAL
Organism
Phaeodactylum tricornutum CCAP 1055/1 (strain: CCAP 1055/1)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Bacillariophyceae; Bacillariophycidae; Naviculales; Phaeodactylaceae; Phaeodactylum
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Genomic context

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See PHATRDRAFT_bd1239 in Genome Data Viewer
Location:
chromosome: Unknown
Exon count:
1

NW_002238024.1Genomic Context describing neighboring genes Neighboring gene probable chorismate mutase Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_002238024.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein phosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
hypothetical protein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NW_002238024.1 Reference assembly

    Range
    8798..11731
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002176194.1 → XP_002176230.1  predicted protein [Phaeodactylum tricornutum CCAP 1055/1]

    See identical proteins and their annotated locations for XP_002176230.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A8J9S0C2, B7S3U2
    Conserved Domains (3) summary
    smart00220
    Location:227 → 509
    S_TKc; Serine/Threonine protein kinases, catalytic domain
    pfam03382
    Location:794 → 913
    DUF285; Mycoplasma protein of unknown function, DUF285
    cl21453
    Location:229 → 508
    PKc_like; Protein Kinases, catalytic domain
Nucleotide Protein
Heading Accession and Version

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