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PHATRDRAFT_bd1631 cell surface receptor protein [ Phaeodactylum tricornutum CCAP 1055/1 ]

Gene ID: 7205153, updated on 21-Dec-2023

Summary

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Gene symbol
PHATRDRAFT_bd1631
Gene description
cell surface receptor protein
Locus tag
PHATRDRAFT_bd1631
Gene type
protein coding
RNA name
cell surface receptor protein
RefSeq status
PROVISIONAL
Organism
Phaeodactylum tricornutum CCAP 1055/1 (strain: CCAP 1055/1)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Bacillariophyceae; Bacillariophycidae; Naviculales; Phaeodactylaceae; Phaeodactylum
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Genomic context

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See PHATRDRAFT_bd1631 in Genome Data Viewer
Location:
chromosome: Unknown
Exon count:
4

NW_002238031.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_002238031.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 3',5'-cyclic-nucleotide phosphodiesterase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables guanylate cyclase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables peptide receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cGMP biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intracellular signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in receptor guanylyl cyclase signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
cell surface receptor protein
XP_002176266.1
  • contains N-terminal CHASE domain predicted to bind diverse low molecular weight ligands, such as the cytokinin-like adenine derivatives or peptides; contains C-terminal Guanylate cyclase domain and 3'5'-cyclic nucleotide phosphodiesterase domain involved in signal transduction; located in plasmamembrane

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NW_002238031.1 Reference assembly

    Range
    2001..5851
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002176230.1 → XP_002176266.1  cell surface receptor protein [Phaeodactylum tricornutum CCAP 1055/1]

    See identical proteins and their annotated locations for XP_002176266.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B7S3X6
    Conserved Domains (3) summary
    cd07302
    Location:572 → 755
    CHD; cyclase homology domain
    smart00044
    Location:566 → 730
    CYCc; Adenylyl- / guanylyl cyclase, catalytic domain
    cl21469
    Location:905 → 1147
    HDc; Metal dependent phosphohydrolases with conserved 'HD' motif
Nucleotide Protein
Heading Accession and Version

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