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CDH4 cadherin 4 [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 720209, updated on 17-Aug-2024

Summary

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Official Symbol
CDH4provided by VGNC
Official Full Name
cadherin 4provided by VGNC
Primary source
VGNC:VGNC:70972
See related
Ensembl:ENSMMUG00000012314
Gene type
protein coding
RefSeq status
MODEL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
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Genomic context

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See CDH4 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
16
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 10 NC_041763.1 (96406502..97092675)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 10 NC_027902.1 (2441635..2639003, complement)

Chromosome 10 - NC_041763.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC114670629 Neighboring gene uncharacterized LOC114670524 Neighboring gene uncharacterized LOC114670526 Neighboring gene uncharacterized LOC114670525 Neighboring gene uncharacterized LOC107000341 Neighboring gene uncharacterized LOC107000338 Neighboring gene uncharacterized LOC114670527 Neighboring gene TATA-box binding protein associated factor 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cadherin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in adherens junction organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell morphogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell-cell junction assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in homophilic cell adhesion via plasma membrane adhesion molecules IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in multicellular organism development IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in adherens junction IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of catenin complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cadherin-4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041763.1 Reference Mmul_10 Primary Assembly

    Range
    96406502..97092675
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028828556.1 → XP_028684389.1  cadherin-4

    UniProtKB/TrEMBL
    F7DGM2, G7N4A5
    Related
    ENSMMUP00000016156.4, ENSMMUT00000017252.4
    Conserved Domains (5) summary
    cd11304
    Location:281 → 388
    Cadherin_repeat; Cadherin tandem repeat domain
    pfam01049
    Location:757 → 913
    Cadherin_C; Cadherin cytoplasmic region
    pfam08758
    Location:30 → 119
    Cadherin_pro; Cadherin prodomain like
    cl28889
    Location:173 → 273
    CA_like; Cadherin repeat-like domain
    cl29226
    Location:634 → 716
    Cadherin; Cadherin domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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