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HOXD9 homeobox D9 [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 720188, updated on 17-Aug-2024

Summary

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Official Symbol
HOXD9provided by VGNC
Official Full Name
homeobox D9provided by VGNC
Primary source
VGNC:VGNC:99370
See related
Ensembl:ENSMMUG00000032599
Gene type
protein coding
RefSeq status
MODEL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
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Genomic context

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See HOXD9 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
2
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 12 NC_041765.1 (63234452..63239177)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 12 NC_027904.1 (63142571..63147457)

Chromosome 12 - NC_041765.1Genomic Context describing neighboring genes Neighboring gene homeobox D11 Neighboring gene homeobox D10 Neighboring gene homeobox D8 Neighboring gene uncharacterized LOC106992626

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in anterior/posterior pattern specification IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in embryonic skeletal system morphogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proximal/distal pattern formation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
homeobox protein Hox-D9

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041765.1 Reference Mmul_10 Primary Assembly

    Range
    63234452..63239177
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015110412.2 → XP_014965898.1  homeobox protein Hox-D9

    UniProtKB/TrEMBL
    A0A1D5QBX8
    Related
    ENSMMUP00000045547.2, ENSMMUT00000058153.2
    Conserved Domains (2) summary
    pfam00046
    Location:281 → 330
    Homeobox; Homeobox domain
    pfam04617
    Location:1 → 158
    Hox9_act; Hox9 activation region
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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