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DEDD death effector domain containing [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 719875, updated on 17-Aug-2024

Summary

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Official Symbol
DEDDprovided by VGNC
Official Full Name
death effector domain containingprovided by VGNC
Primary source
VGNC:VGNC:71768
Locus tag
EGK_01526
See related
Ensembl:ENSMMUG00000002010
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
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Genomic context

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See DEDD in Genome Data Viewer
Location:
chromosome: 1
Exon count:
8
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 1 NC_041754.1 (89814903..89826345)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 1 NC_027893.1 (135851283..135862608, complement)

Chromosome 1 - NC_041754.1Genomic Context describing neighboring genes Neighboring gene beta-1,4-galactosyltransferase 3 Neighboring gene protoporphyrinogen oxidase Neighboring gene ubiquitin specific peptidase 21 Neighboring gene ubiquitin-fold modifier conjugating enzyme 1 Neighboring gene nitrilase 1 Neighboring gene prefoldin subunit 2 Neighboring gene kelch domain containing 9

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques. Yan G, et al. Nat Biotechnol, 2011 Oct 16. PMID 22002653
  2. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in apoptotic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in extrinsic apoptotic signaling pathway via death domain receptors IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of apoptotic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
death effector domain-containing protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001257441.1 → NP_001244370.1  death effector domain-containing protein

    See identical proteins and their annotated locations for NP_001244370.1

    Status: PROVISIONAL

    Source sequence(s)
    JU337080
    UniProtKB/TrEMBL
    A0A8J8XRQ1, F6UTR2, F6UTS6, G7ME89
    Related
    ENSMMUP00000070776.1, ENSMMUT00000096721.1
    Conserved Domains (1) summary
    cd08790
    Location:22 → 118
    DED_DEDD; Death Effector Domain of DEDD

RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041754.1 Reference Mmul_10 Primary Assembly

    Range
    89814903..89826345
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015113077.2 → XP_014968563.1  death effector domain-containing protein isoform X1

    UniProtKB/TrEMBL
    A0A8J8XRQ1, F6UTR2, F6UTS6, G7ME89
    Related
    ENSMMUP00000066734.1, ENSMMUT00000079903.1
    Conserved Domains (1) summary
    cd08790
    Location:22 → 118
    DED_DEDD; Death Effector Domain of DEDD

  2. XM_015113066.2 → XP_014968552.1  death effector domain-containing protein isoform X1

    UniProtKB/TrEMBL
    A0A8J8XRQ1, F6UTR2, F6UTS6, G7ME89
    Related
    ENSMMUP00000075635.1, ENSMMUT00000101195.1
    Conserved Domains (1) summary
    cd08790
    Location:22 → 118
    DED_DEDD; Death Effector Domain of DEDD

  3. XM_015113074.2 → XP_014968560.1  death effector domain-containing protein isoform X1

    UniProtKB/TrEMBL
    A0A8J8XRQ1, F6UTR2, F6UTS6, G7ME89
    Conserved Domains (1) summary
    cd08790
    Location:22 → 118
    DED_DEDD; Death Effector Domain of DEDD

  4. XM_015113067.2 → XP_014968553.1  death effector domain-containing protein isoform X1

    UniProtKB/TrEMBL
    A0A8J8XRQ1, F6UTR2, F6UTS6, G7ME89
    Related
    ENSMMUP00000078274.1, ENSMMUT00000110256.1
    Conserved Domains (1) summary
    cd08790
    Location:22 → 118
    DED_DEDD; Death Effector Domain of DEDD

  5. XM_015113091.2 → XP_014968577.1  death effector domain-containing protein isoform X1

    UniProtKB/TrEMBL
    A0A8J8XRQ1, F6UTR2, F6UTS6, G7ME89
    Conserved Domains (1) summary
    cd08790
    Location:22 → 118
    DED_DEDD; Death Effector Domain of DEDD

  6. XM_015113058.2 → XP_014968544.1  death effector domain-containing protein isoform X1

    UniProtKB/TrEMBL
    A0A8J8XRQ1, F6UTR2, F6UTS6, G7ME89
    Related
    ENSMMUP00000078641.1, ENSMMUT00000089427.1
    Conserved Domains (1) summary
    cd08790
    Location:22 → 118
    DED_DEDD; Death Effector Domain of DEDD
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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