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COPA COPI coat complex subunit alpha [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 719683, updated on 17-Aug-2024

Summary

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Official Symbol
COPAprovided by VGNC
Official Full Name
COPI coat complex subunit alphaprovided by VGNC
Primary source
VGNC:VGNC:71311
Locus tag
EGK_01503
See related
Ensembl:ENSMMUG00000021854
Gene type
protein coding
RefSeq status
MODEL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
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Genomic context

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See COPA in Genome Data Viewer
Location:
chromosome: 1
Exon count:
33
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 1 NC_041754.1 (90595569..90649499)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 1 NC_027893.1 (135023112..135074377, complement)

Chromosome 1 - NC_041754.1Genomic Context describing neighboring genes Neighboring gene U4 spliceosomal RNA Neighboring gene nescient helix-loop-helix 1 Neighboring gene nicastrin Neighboring gene uncharacterized LOC114670148 Neighboring gene peroxisomal biogenesis factor 19 Neighboring gene DDB1 and CUL4 associated factor 8

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural molecule activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intra-Golgi vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intracellular protein transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of COPI vesicle coat IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
coatomer subunit alpha
Names
coatomer protein complex subunit alpha

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041754.1 Reference Mmul_10 Primary Assembly

    Range
    90595569..90649499
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015113474.2 → XP_014968960.1  coatomer subunit alpha isoform X2

    UniProtKB/TrEMBL
    A0A1D5RJI0, F7EHZ7, H9FPZ1
    Related
    ENSMMUP00000060474.2, ENSMMUT00000057634.2
    Conserved Domains (5) summary
    COG2319
    Location:99 → 501
    WD40; WD40 repeat [General function prediction only]
    cd00200
    Location:9 → 318
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    pfam04053
    Location:339 → 767
    Coatomer_WDAD; Coatomer WD associated region
    pfam06957
    Location:816 → 1218
    COPI_C; Coatomer (COPI) alpha subunit C-terminus
    sd00039
    Location:15 → 49
    7WD40; WD40 repeat [structural motif]

  2. XM_015113467.2 → XP_014968953.1  coatomer subunit alpha isoform X1

    UniProtKB/TrEMBL
    A0A8J8XWI1, F7EHZ7, G7ME70, H9FPZ4
    Related
    ENSMMUP00000028777.4, ENSMMUT00000030749.4
    Conserved Domains (5) summary
    COG2319
    Location:99 → 501
    WD40; WD40 repeat [General function prediction only]
    cd00200
    Location:9 → 318
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    pfam04053
    Location:339 → 776
    Coatomer_WDAD; Coatomer WD associated region
    pfam06957
    Location:825 → 1227
    COPI_C; Coatomer (COPI) alpha subunit C-terminus
    sd00039
    Location:15 → 49
    7WD40; WD40 repeat [structural motif]
Nucleotide Protein
Heading Accession and Version

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