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ZGPAT zinc finger CCCH-type and G-patch domain containing [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 719499, updated on 17-Aug-2024

Summary

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Official Symbol
ZGPATprovided by VGNC
Official Full Name
zinc finger CCCH-type and G-patch domain containingprovided by VGNC
Primary source
VGNC:VGNC:98469
See related
Ensembl:ENSMMUG00000000171
Gene type
protein coding
RefSeq status
MODEL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
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Genomic context

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See ZGPAT in Genome Data Viewer
Location:
chromosome: 10
Exon count:
11
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 10 NC_041763.1 (98917626..98948579)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 10 NC_027902.1 (566271..594570, complement)

Chromosome 10 - NC_041763.1Genomic Context describing neighboring genes Neighboring gene regulator of telomere elongation helicase 1 Neighboring gene TNF receptor superfamily member 6b Neighboring gene ADP ribosylation factor related protein 1 Neighboring gene LIM domain-containing protein A-like Neighboring gene SLC2A4 regulator Neighboring gene Lck interacting transmembrane adaptor 1 Neighboring gene zinc finger and BTB domain containing 46 Neighboring gene uncharacterized LOC107000330

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger CCCH-type with G patch domain-containing protein
Names
zinc finger, CCCH-type with G patch domain

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041763.1 Reference Mmul_10 Primary Assembly

    Range
    98917626..98948579
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015148589.2 → XP_015004075.2  zinc finger CCCH-type with G patch domain-containing protein isoform X1

    UniProtKB/TrEMBL
    F7GUR6, H9G0U7
    Related
    ENSMMUP00000062558.1, ENSMMUT00000102126.1
    Conserved Domains (4) summary
    cd04508
    Location:220 → 250
    TUDOR; Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to ...
    smart00356
    Location:177 → 198
    ZnF_C3H1; zinc finger
    pfam06008
    Location:399 → 497
    Laminin_I; Laminin Domain I
    pfam01585
    Location:312 → 353
    G-patch; G-patch domain

  2. XM_015148590.2 → XP_015004076.2  zinc finger CCCH-type with G patch domain-containing protein isoform X2

    UniProtKB/TrEMBL
    H9G0U7
    Conserved Domains (4) summary
    cd04508
    Location:220 → 250
    TUDOR; Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to ...
    smart00356
    Location:177 → 198
    ZnF_C3H1; zinc finger
    pfam06008
    Location:392 → 490
    Laminin_I; Laminin Domain I
    pfam01585
    Location:305 → 346
    G-patch; G-patch domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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