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PATJ PATJ crumbs cell polarity complex component [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 719263, updated on 17-Aug-2024

Summary

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Official Symbol
PATJprovided by VGNC
Official Full Name
PATJ crumbs cell polarity complex componentprovided by VGNC
Primary source
VGNC:VGNC:100026
See related
Ensembl:ENSMMUG00000003113
Gene type
protein coding
RefSeq status
MODEL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
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Genomic context

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See PATJ in Genome Data Viewer
Location:
chromosome: 1
Exon count:
47
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 1 NC_041754.1 (162285946..162708328, complement)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 1 NC_027893.1 (61426846..61851573)

Chromosome 1 - NC_041754.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC114669835 Neighboring gene uncharacterized LOC114672197 Neighboring gene U6 spliceosomal RNA Neighboring gene U6 spliceosomal RNA Neighboring gene cuticle collagen 39-like Neighboring gene TM2 domain containing 1 Neighboring gene sepiapterin reductase pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
inaD-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041754.1 Reference Mmul_10 Primary Assembly

    Range
    162285946..162708328 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015141026.2 → XP_014996512.2  inaD-like protein isoform X5

    UniProtKB/TrEMBL
    A0A1D5REZ5, G7MHB0
    Related
    ENSMMUP00000058888.2, ENSMMUT00000065314.2
    Conserved Domains (3) summary
    smart00228
    Location:1434 → 1519
    PDZ; Domain present in PSD-95, Dlg, and ZO-1/2
    cd00992
    Location:1674 → 1759
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    pfam09045
    Location:8 → 65
    L27_2

  2. XM_015141019.2 → XP_014996505.2  inaD-like protein isoform X4

    UniProtKB/TrEMBL
    A0A5F7Z7Q7, A0A5F7ZRG9
    Related
    ENSMMUP00000061478.1, ENSMMUT00000106335.1
    Conserved Domains (3) summary
    smart00228
    Location:1394 → 1479
    PDZ; Domain present in PSD-95, Dlg, and ZO-1/2
    cd00992
    Location:1757 → 1841
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    pfam09045
    Location:8 → 65
    L27_2

  3. XM_015141011.2 → XP_014996497.2  inaD-like protein isoform X2

    UniProtKB/TrEMBL
    A0A5F7ZRG9
    Conserved Domains (3) summary
    smart00228
    Location:1429 → 1514
    PDZ; Domain present in PSD-95, Dlg, and ZO-1/2
    cd00992
    Location:1792 → 1876
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    pfam09045
    Location:8 → 65
    L27_2

  4. XM_028833013.1 → XP_028688846.1  inaD-like protein isoform X3

    UniProtKB/TrEMBL
    A0A5F7ZNN6, A0A5F7ZRG9
    Related
    ENSMMUP00000067227.1, ENSMMUT00000096106.1
    Conserved Domains (3) summary
    smart00228
    Location:1434 → 1519
    PDZ; Domain present in PSD-95, Dlg, and ZO-1/2
    cd00992
    Location:1768 → 1852
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    pfam09045
    Location:8 → 65
    L27_2

  5. XM_015140988.2 → XP_014996474.2  inaD-like protein isoform X1

    UniProtKB/TrEMBL
    A0A1D5QRJ6, A0A5F7ZRG9
    Conserved Domains (3) summary
    smart00228
    Location:1434 → 1519
    PDZ; Domain present in PSD-95, Dlg, and ZO-1/2
    cd00992
    Location:1797 → 1881
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    pfam09045
    Location:8 → 65
    L27_2

  6. XM_015140995.2 → XP_014996481.2  inaD-like protein isoform X1

    UniProtKB/TrEMBL
    A0A1D5QRJ6, A0A5F7ZRG9
    Related
    ENSMMUP00000050674.2, ENSMMUT00000059267.2
    Conserved Domains (3) summary
    smart00228
    Location:1434 → 1519
    PDZ; Domain present in PSD-95, Dlg, and ZO-1/2
    cd00992
    Location:1797 → 1881
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    pfam09045
    Location:8 → 65
    L27_2

  7. XM_028832997.1 → XP_028688830.1  inaD-like protein isoform X1

    UniProtKB/TrEMBL
    A0A1D5QRJ6, A0A5F7ZRG9
    Conserved Domains (3) summary
    smart00228
    Location:1434 → 1519
    PDZ; Domain present in PSD-95, Dlg, and ZO-1/2
    cd00992
    Location:1797 → 1881
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    pfam09045
    Location:8 → 65
    L27_2

  8. XM_028833032.1 → XP_028688865.1  inaD-like protein isoform X6

    UniProtKB/TrEMBL
    G7MHB0
    Conserved Domains (3) summary
    smart00228
    Location:1434 → 1519
    PDZ; Domain present in PSD-95, Dlg, and ZO-1/2
    cd00992
    Location:246 → 325
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    pfam09045
    Location:8 → 65
    L27_2
Nucleotide Protein
Heading Accession and Version

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