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BPTF bromodomain PHD finger transcription factor [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 718812, updated on 17-Aug-2024

Summary

Official Symbol
BPTFprovided by VGNC
Official Full Name
bromodomain PHD finger transcription factorprovided by VGNC
Primary source
VGNC:VGNC:70464
See related
Ensembl:ENSMMUG00000009734
Gene type
protein coding
RefSeq status
MODEL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
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Genomic context

See BPTF in Genome Data Viewer
Location:
chromosome: 16
Exon count:
32
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 16 NC_041769.1 (64221639..64376193)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 16 NC_027908.1 (61337995..61492510)

Chromosome 16 - NC_041769.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA SNORA38 Neighboring gene nucleolar protein 11 Neighboring gene 60S ribosomal protein L17 pseudogene Neighboring gene chromosome 16 C17orf58 homolog Neighboring gene U6 spliceosomal RNA

Genomic regions, transcripts, and products

General gene information

Markers

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
PubMed 
enables methylated histone binding IEA
Inferred from Electronic Annotation
more info
PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
PubMed 
Component Evidence Code Pubs
part_of NURF complex IEA
Inferred from Electronic Annotation
more info
PubMed 

General protein information

Preferred Names
nucleosome-remodeling factor subunit BPTF

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041769.1 Reference Mmul_10 Primary Assembly

    Range
    64221639..64376193
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028836701.1XP_028692534.1  nucleosome-remodeling factor subunit BPTF isoform X3

    UniProtKB/TrEMBL
    G7NJB7
    Conserved Domains (8) summary
    cd05509
    Location:30413141
    Bromo_gcn5_like; Bromodomain; Gcn5_like subfamily. Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long ...
    cd15559
    Location:391433
    PHD1_BPTF; PHD finger 1 found in bromodomain and PHD finger-containing transcription factor (BPTF)
    cd15560
    Location:29793025
    PHD2_3_BPTF; PHD finger 2 and 3 found in bromodomain and PHD finger-containing transcription factor (BPTF)
    pfam09606
    Location:22652545
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    pfam15613
    Location:455523
    WSD; Williams-Beuren syndrome DDT (WSD), D-TOX E motif
    pfam02791
    Location:240296
    DDT; DDT domain
    pfam15612
    Location:343380
    WHIM1; WSTF, HB1, Itc1p, MBD9 motif 1
    pfam17380
    Location:26652839
    DUF5401; Family of unknown function (DUF5401)
  2. XM_028836699.1XP_028692532.1  nucleosome-remodeling factor subunit BPTF isoform X1

    UniProtKB/TrEMBL
    F6ZW60, G7NJB7
    Related
    ENSMMUP00000012745.4, ENSMMUT00000013603.4
    Conserved Domains (8) summary
    cd05509
    Location:30413141
    Bromo_gcn5_like; Bromodomain; Gcn5_like subfamily. Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long ...
    cd15559
    Location:391433
    PHD1_BPTF; PHD finger 1 found in bromodomain and PHD finger-containing transcription factor (BPTF)
    cd15560
    Location:29793025
    PHD2_3_BPTF; PHD finger 2 and 3 found in bromodomain and PHD finger-containing transcription factor (BPTF)
    pfam09606
    Location:22652545
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    pfam15613
    Location:455523
    WSD; Williams-Beuren syndrome DDT (WSD), D-TOX E motif
    pfam02791
    Location:240296
    DDT; DDT domain
    pfam15612
    Location:343380
    WHIM1; WSTF, HB1, Itc1p, MBD9 motif 1
    pfam17380
    Location:26652839
    DUF5401; Family of unknown function (DUF5401)
  3. XM_028836703.1XP_028692536.1  nucleosome-remodeling factor subunit BPTF isoform X5

    UniProtKB/TrEMBL
    F7BQT5, G7NJB7
    Related
    ENSMMUP00000034157.3, ENSMMUT00000041121.3
    Conserved Domains (8) summary
    cd05509
    Location:29833083
    Bromo_gcn5_like; Bromodomain; Gcn5_like subfamily. Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long ...
    cd15559
    Location:391433
    PHD1_BPTF; PHD finger 1 found in bromodomain and PHD finger-containing transcription factor (BPTF)
    cd15560
    Location:29212967
    PHD2_3_BPTF; PHD finger 2 and 3 found in bromodomain and PHD finger-containing transcription factor (BPTF)
    pfam09606
    Location:22652557
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    pfam15613
    Location:455523
    WSD; Williams-Beuren syndrome DDT (WSD), D-TOX E motif
    pfam02791
    Location:240296
    DDT; DDT domain
    pfam15612
    Location:343380
    WHIM1; WSTF, HB1, Itc1p, MBD9 motif 1
    pfam17380
    Location:26652839
    DUF5401; Family of unknown function (DUF5401)
  4. XM_028836711.1XP_028692544.1  nucleosome-remodeling factor subunit BPTF isoform X14

    UniProtKB/TrEMBL
    G7NJB7
    Conserved Domains (7) summary
    cd05509
    Location:28402940
    Bromo_gcn5_like; Bromodomain; Gcn5_like subfamily. Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long ...
    cd15559
    Location:391433
    PHD1_BPTF; PHD finger 1 found in bromodomain and PHD finger-containing transcription factor (BPTF)
    cd15560
    Location:27782824
    PHD2_3_BPTF; PHD finger 2 and 3 found in bromodomain and PHD finger-containing transcription factor (BPTF)
    pfam09606
    Location:21832539
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    pfam15613
    Location:455523
    WSD; Williams-Beuren syndrome DDT (WSD), D-TOX E motif
    pfam02791
    Location:240296
    DDT; DDT domain
    pfam15612
    Location:343380
    WHIM1; WSTF, HB1, Itc1p, MBD9 motif 1
  5. XM_028836702.1XP_028692535.1  nucleosome-remodeling factor subunit BPTF isoform X4

    UniProtKB/TrEMBL
    F6ZW43, G7NJB7
    Related
    ENSMMUP00000012747.4, ENSMMUT00000013605.4
    Conserved Domains (8) summary
    cd05509
    Location:29873087
    Bromo_gcn5_like; Bromodomain; Gcn5_like subfamily. Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long ...
    cd15559
    Location:391433
    PHD1_BPTF; PHD finger 1 found in bromodomain and PHD finger-containing transcription factor (BPTF)
    cd15560
    Location:29252971
    PHD2_3_BPTF; PHD finger 2 and 3 found in bromodomain and PHD finger-containing transcription factor (BPTF)
    pfam03157
    Location:21032498
    Glutenin_hmw; High molecular weight glutenin subunit
    pfam15613
    Location:455523
    WSD; Williams-Beuren syndrome DDT (WSD), D-TOX E motif
    pfam02791
    Location:240296
    DDT; DDT domain
    pfam15612
    Location:343380
    WHIM1; WSTF, HB1, Itc1p, MBD9 motif 1
    pfam17380
    Location:26112785
    DUF5401; Family of unknown function (DUF5401)
  6. XM_015120174.2XP_014975660.2  nucleosome-remodeling factor subunit BPTF isoform X8

    UniProtKB/TrEMBL
    G7NJB7
    Conserved Domains (8) summary
    cd05509
    Location:29293029
    Bromo_gcn5_like; Bromodomain; Gcn5_like subfamily. Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long ...
    cd15559
    Location:391433
    PHD1_BPTF; PHD finger 1 found in bromodomain and PHD finger-containing transcription factor (BPTF)
    cd15560
    Location:28672913
    PHD2_3_BPTF; PHD finger 2 and 3 found in bromodomain and PHD finger-containing transcription factor (BPTF)
    pfam03157
    Location:21032498
    Glutenin_hmw; High molecular weight glutenin subunit
    pfam15613
    Location:455523
    WSD; Williams-Beuren syndrome DDT (WSD), D-TOX E motif
    pfam02791
    Location:240296
    DDT; DDT domain
    pfam15612
    Location:343380
    WHIM1; WSTF, HB1, Itc1p, MBD9 motif 1
    pfam17380
    Location:26112785
    DUF5401; Family of unknown function (DUF5401)
  7. XM_028836700.1XP_028692533.1  nucleosome-remodeling factor subunit BPTF isoform X2

    UniProtKB/TrEMBL
    G7NJB7
    Conserved Domains (8) summary
    cd05509
    Location:30403140
    Bromo_gcn5_like; Bromodomain; Gcn5_like subfamily. Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long ...
    cd15559
    Location:391433
    PHD1_BPTF; PHD finger 1 found in bromodomain and PHD finger-containing transcription factor (BPTF)
    cd15560
    Location:29783024
    PHD2_3_BPTF; PHD finger 2 and 3 found in bromodomain and PHD finger-containing transcription factor (BPTF)
    pfam09606
    Location:22642556
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    pfam15613
    Location:455523
    WSD; Williams-Beuren syndrome DDT (WSD), D-TOX E motif
    pfam02791
    Location:240296
    DDT; DDT domain
    pfam15612
    Location:343380
    WHIM1; WSTF, HB1, Itc1p, MBD9 motif 1
    pfam17380
    Location:26642838
    DUF5401; Family of unknown function (DUF5401)
  8. XM_028836704.1XP_028692537.1  nucleosome-remodeling factor subunit BPTF isoform X6

    UniProtKB/TrEMBL
    F6ZW73, G7NJB7
    Related
    ENSMMUP00000012743.4, ENSMMUT00000013601.4
    Conserved Domains (8) summary
    cd05509
    Location:29783078
    Bromo_gcn5_like; Bromodomain; Gcn5_like subfamily. Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long ...
    cd15559
    Location:391433
    PHD1_BPTF; PHD finger 1 found in bromodomain and PHD finger-containing transcription factor (BPTF)
    cd15560
    Location:29162962
    PHD2_3_BPTF; PHD finger 2 and 3 found in bromodomain and PHD finger-containing transcription factor (BPTF)
    pfam09606
    Location:22022494
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    pfam15613
    Location:455523
    WSD; Williams-Beuren syndrome DDT (WSD), D-TOX E motif
    pfam02791
    Location:240296
    DDT; DDT domain
    pfam15612
    Location:343380
    WHIM1; WSTF, HB1, Itc1p, MBD9 motif 1
    pfam17380
    Location:26022776
    DUF5401; Family of unknown function (DUF5401)
  9. XM_028836705.1XP_028692538.1  nucleosome-remodeling factor subunit BPTF isoform X7

    UniProtKB/TrEMBL
    A0A5F8AT01, G7NJB7
    Related
    ENSMMUP00000080208.1, ENSMMUT00000095666.1
    Conserved Domains (8) summary
    cd05509
    Location:29783078
    Bromo_gcn5_like; Bromodomain; Gcn5_like subfamily. Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long ...
    cd15559
    Location:391433
    PHD1_BPTF; PHD finger 1 found in bromodomain and PHD finger-containing transcription factor (BPTF)
    cd15560
    Location:29162962
    PHD2_3_BPTF; PHD finger 2 and 3 found in bromodomain and PHD finger-containing transcription factor (BPTF)
    pfam09606
    Location:22022494
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    pfam15613
    Location:455523
    WSD; Williams-Beuren syndrome DDT (WSD), D-TOX E motif
    pfam02791
    Location:240296
    DDT; DDT domain
    pfam15612
    Location:343380
    WHIM1; WSTF, HB1, Itc1p, MBD9 motif 1
    pfam17380
    Location:26022776
    DUF5401; Family of unknown function (DUF5401)
  10. XM_028836706.1XP_028692539.1  nucleosome-remodeling factor subunit BPTF isoform X9

    UniProtKB/TrEMBL
    G7NJB7
    Conserved Domains (8) summary
    cd05509
    Location:29153015
    Bromo_gcn5_like; Bromodomain; Gcn5_like subfamily. Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long ...
    cd15559
    Location:391433
    PHD1_BPTF; PHD finger 1 found in bromodomain and PHD finger-containing transcription factor (BPTF)
    cd15560
    Location:28532899
    PHD2_3_BPTF; PHD finger 2 and 3 found in bromodomain and PHD finger-containing transcription factor (BPTF)
    pfam09606
    Location:21392431
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    pfam15613
    Location:455523
    WSD; Williams-Beuren syndrome DDT (WSD), D-TOX E motif
    pfam02791
    Location:240296
    DDT; DDT domain
    pfam15612
    Location:343380
    WHIM1; WSTF, HB1, Itc1p, MBD9 motif 1
    pfam17380
    Location:25392713
    DUF5401; Family of unknown function (DUF5401)
  11. XM_028836713.1XP_028692546.1  nucleosome-remodeling factor subunit BPTF isoform X16

    UniProtKB/TrEMBL
    G7NJB7
    Conserved Domains (8) summary
    cd05509
    Location:28032903
    Bromo_gcn5_like; Bromodomain; Gcn5_like subfamily. Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long ...
    cd15559
    Location:391433
    PHD1_BPTF; PHD finger 1 found in bromodomain and PHD finger-containing transcription factor (BPTF)
    cd15560
    Location:27412787
    PHD2_3_BPTF; PHD finger 2 and 3 found in bromodomain and PHD finger-containing transcription factor (BPTF)
    pfam03157
    Location:19772372
    Glutenin_hmw; High molecular weight glutenin subunit
    pfam15613
    Location:455523
    WSD; Williams-Beuren syndrome DDT (WSD), D-TOX E motif
    pfam02791
    Location:240296
    DDT; DDT domain
    pfam15612
    Location:343380
    WHIM1; WSTF, HB1, Itc1p, MBD9 motif 1
    pfam17380
    Location:24852659
    DUF5401; Family of unknown function (DUF5401)
  12. XM_028836708.1XP_028692541.1  nucleosome-remodeling factor subunit BPTF isoform X11

    UniProtKB/TrEMBL
    G7NJB7
    Conserved Domains (8) summary
    cd05509
    Location:28982998
    Bromo_gcn5_like; Bromodomain; Gcn5_like subfamily. Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long ...
    COG5034
    Location:25972827
    TNG2; Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
    cd15559
    Location:391433
    PHD1_BPTF; PHD finger 1 found in bromodomain and PHD finger-containing transcription factor (BPTF)
    cd15560
    Location:28362882
    PHD2_3_BPTF; PHD finger 2 and 3 found in bromodomain and PHD finger-containing transcription factor (BPTF)
    pfam09606
    Location:21832539
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    pfam15613
    Location:455523
    WSD; Williams-Beuren syndrome DDT (WSD), D-TOX E motif
    pfam02791
    Location:240296
    DDT; DDT domain
    pfam15612
    Location:343380
    WHIM1; WSTF, HB1, Itc1p, MBD9 motif 1
  13. XM_028836710.1XP_028692543.1  nucleosome-remodeling factor subunit BPTF isoform X13

    UniProtKB/TrEMBL
    G7NJB7
    Conserved Domains (7) summary
    cd05509
    Location:28442944
    Bromo_gcn5_like; Bromodomain; Gcn5_like subfamily. Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long ...
    cd15559
    Location:391433
    PHD1_BPTF; PHD finger 1 found in bromodomain and PHD finger-containing transcription factor (BPTF)
    cd15560
    Location:27822828
    PHD2_3_BPTF; PHD finger 2 and 3 found in bromodomain and PHD finger-containing transcription factor (BPTF)
    pfam03157
    Location:21032488
    Glutenin_hmw; High molecular weight glutenin subunit
    pfam15613
    Location:455523
    WSD; Williams-Beuren syndrome DDT (WSD), D-TOX E motif
    pfam02791
    Location:240296
    DDT; DDT domain
    pfam15612
    Location:343380
    WHIM1; WSTF, HB1, Itc1p, MBD9 motif 1
  14. XM_028836712.1XP_028692545.1  nucleosome-remodeling factor subunit BPTF isoform X15

    UniProtKB/TrEMBL
    G7NJB7
    Conserved Domains (7) summary
    cd05509
    Location:27862886
    Bromo_gcn5_like; Bromodomain; Gcn5_like subfamily. Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long ...
    cd15559
    Location:391433
    PHD1_BPTF; PHD finger 1 found in bromodomain and PHD finger-containing transcription factor (BPTF)
    cd15560
    Location:27242770
    PHD2_3_BPTF; PHD finger 2 and 3 found in bromodomain and PHD finger-containing transcription factor (BPTF)
    pfam03157
    Location:21032488
    Glutenin_hmw; High molecular weight glutenin subunit
    pfam15613
    Location:455523
    WSD; Williams-Beuren syndrome DDT (WSD), D-TOX E motif
    pfam02791
    Location:240296
    DDT; DDT domain
    pfam15612
    Location:343380
    WHIM1; WSTF, HB1, Itc1p, MBD9 motif 1
  15. XM_028836709.1XP_028692542.1  nucleosome-remodeling factor subunit BPTF isoform X12

    UniProtKB/TrEMBL
    G7NJB7
    Conserved Domains (8) summary
    cd05509
    Location:28612961
    Bromo_gcn5_like; Bromodomain; Gcn5_like subfamily. Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long ...
    cd15559
    Location:391433
    PHD1_BPTF; PHD finger 1 found in bromodomain and PHD finger-containing transcription factor (BPTF)
    cd15560
    Location:27992845
    PHD2_3_BPTF; PHD finger 2 and 3 found in bromodomain and PHD finger-containing transcription factor (BPTF)
    pfam03157
    Location:19772372
    Glutenin_hmw; High molecular weight glutenin subunit
    pfam15613
    Location:455523
    WSD; Williams-Beuren syndrome DDT (WSD), D-TOX E motif
    pfam02791
    Location:240296
    DDT; DDT domain
    pfam15612
    Location:343380
    WHIM1; WSTF, HB1, Itc1p, MBD9 motif 1
    pfam17380
    Location:24852659
    DUF5401; Family of unknown function (DUF5401)
  16. XM_028836707.1XP_028692540.1  nucleosome-remodeling factor subunit BPTF isoform X10

    UniProtKB/TrEMBL
    G7NJB7
    Conserved Domains (8) summary
    cd05509
    Location:29033003
    Bromo_gcn5_like; Bromodomain; Gcn5_like subfamily. Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long ...
    cd15559
    Location:253295
    PHD1_BPTF; PHD finger 1 found in bromodomain and PHD finger-containing transcription factor (BPTF)
    cd15560
    Location:28412887
    PHD2_3_BPTF; PHD finger 2 and 3 found in bromodomain and PHD finger-containing transcription factor (BPTF)
    pfam09606
    Location:21272419
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    pfam15613
    Location:317385
    WSD; Williams-Beuren syndrome DDT (WSD), D-TOX E motif
    pfam02791
    Location:102158
    DDT; DDT domain
    pfam15612
    Location:205242
    WHIM1; WSTF, HB1, Itc1p, MBD9 motif 1
    pfam17380
    Location:25272701
    DUF5401; Family of unknown function (DUF5401)

RNA

  1. XR_003723844.1 RNA Sequence

  2. XR_003723843.1 RNA Sequence