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HMGA1 high mobility group AT-hook 1 [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 718536, updated on 17-Aug-2024

Summary

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Official Symbol
HMGA1provided by VGNC
Official Full Name
high mobility group AT-hook 1provided by VGNC
Primary source
VGNC:VGNC:81076
See related
Ensembl:ENSMMUG00000019529
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
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Genomic context

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See HMGA1 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
8
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 4 NC_041757.1 (135249533..135259619, complement)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 4 NC_027896.1 (35089780..35103160)

Chromosome 4 - NC_041757.1Genomic Context describing neighboring genes Neighboring gene nudix hydrolase 3 Neighboring gene uncharacterized LOC106997914 Neighboring gene 40S ribosomal protein S26-like Neighboring gene small integral membrane protein 29 Neighboring gene glutamate metabotropic receptor 4 Neighboring gene motilin

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription coregulator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of chromatin IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
high mobility group protein HMG-I/HMG-Y

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001266352.1 → NP_001253281.1  high mobility group protein HMG-I/HMG-Y

    See identical proteins and their annotated locations for NP_001253281.1

    Status: PROVISIONAL

    Source sequence(s)
    JV046915
    UniProtKB/TrEMBL
    H9Z8B9

RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041757.1 Reference Mmul_10 Primary Assembly

    Range
    135249533..135259619 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028846865.1 → XP_028702698.1  high mobility group protein HMG-I/HMG-Y isoform X1

    UniProtKB/TrEMBL
    H9FTR0

  2. XM_028846869.1 → XP_028702702.1  high mobility group protein HMG-I/HMG-Y isoform X2

    UniProtKB/TrEMBL
    H9Z8B9

  3. XM_028846868.1 → XP_028702701.1  high mobility group protein HMG-I/HMG-Y isoform X1

    UniProtKB/TrEMBL
    H9FTR0

  4. XM_028846866.1 → XP_028702699.1  high mobility group protein HMG-I/HMG-Y isoform X1

    UniProtKB/TrEMBL
    H9FTR0
    Related
    ENSMMUP00000067547.1, ENSMMUT00000085453.1

  5. XM_028846867.1 → XP_028702700.1  high mobility group protein HMG-I/HMG-Y isoform X1

    UniProtKB/TrEMBL
    H9FTR0

  6. XM_028846870.1 → XP_028702703.1  high mobility group protein HMG-I/HMG-Y isoform X2

    UniProtKB/TrEMBL
    H9Z8B9
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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