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HAPLN2 hyaluronan and proteoglycan link protein 2 [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 718500, updated on 17-Aug-2024

Summary

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Official Symbol
HAPLN2provided by VGNC
Official Full Name
hyaluronan and proteoglycan link protein 2provided by VGNC
Primary source
VGNC:VGNC:106378
See related
Ensembl:ENSMMUG00000060011
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
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Genomic context

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See HAPLN2 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
7
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 1 NC_041754.1 (94341943..94348259, complement)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 1 NC_027893.1 (131245605..131251668)

Chromosome 1 - NC_041754.1Genomic Context describing neighboring genes Neighboring gene nestin Neighboring gene brevican Neighboring gene uncharacterized LOC106992915 Neighboring gene G-patch domain containing 4 Neighboring gene NAD(P)HX epimerase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hyaluronic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
hyaluronan and proteoglycan link protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001265852.1 → NP_001252781.1  hyaluronan and proteoglycan link protein 2 precursor

    See identical proteins and their annotated locations for NP_001252781.1

    Status: PROVISIONAL

    Source sequence(s)
    JU322554
    UniProtKB/TrEMBL
    F7FY38, G7ME04
    Related
    ENSMMUP00000076060.1, ENSMMUT00000080968.1
    Conserved Domains (4) summary
    cd03518
    Location:148 → 241
    Link_domain_HAPLN_module_1; this link domain is found in the first link module of proteins similar to the vertebrate HAPLN (hyaluronan/HA and proteoglycan binding link) protein family which includes cartilage link protein. The link domain is a HA-binding domain. HAPLNs contain two ...
    cd03519
    Location:250 → 337
    Link_domain_HAPLN_module_2; this link domain is found in the second link module of proteins similar to the vertebrate HAPLN (hyaluronan/HA and proteoglycan binding link) protein family which includes cartilage link protein. The link domain is a HA-binding domain. HAPLNs contain two ...
    cd00096
    Location:45 → 47
    Ig; Ig strand A' [structural motif]
    cl11960
    Location:45 → 150
    Ig; Immunoglobulin domain

RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041754.1 Reference Mmul_10 Primary Assembly

    Range
    94341943..94348259 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028845966.1 → XP_028701799.1  hyaluronan and proteoglycan link protein 2 isoform X2

    UniProtKB/TrEMBL
    F7FY38, G7ME04
    Conserved Domains (4) summary
    cd03518
    Location:148 → 241
    Link_domain_HAPLN_module_1; this link domain is found in the first link module of proteins similar to the vertebrate HAPLN (hyaluronan/HA and proteoglycan binding link) protein family which includes cartilage link protein. The link domain is a HA-binding domain. HAPLNs contain two ...
    cd03519
    Location:250 → 337
    Link_domain_HAPLN_module_2; this link domain is found in the second link module of proteins similar to the vertebrate HAPLN (hyaluronan/HA and proteoglycan binding link) protein family which includes cartilage link protein. The link domain is a HA-binding domain. HAPLNs contain two ...
    cd00096
    Location:45 → 47
    Ig; Ig strand A' [structural motif]
    cl11960
    Location:45 → 150
    Ig; Immunoglobulin domain

  2. XM_028845977.1 → XP_028701810.1  hyaluronan and proteoglycan link protein 2 isoform X2

    UniProtKB/TrEMBL
    F7FY38, G7ME04
    Conserved Domains (4) summary
    cd03518
    Location:148 → 241
    Link_domain_HAPLN_module_1; this link domain is found in the first link module of proteins similar to the vertebrate HAPLN (hyaluronan/HA and proteoglycan binding link) protein family which includes cartilage link protein. The link domain is a HA-binding domain. HAPLNs contain two ...
    cd03519
    Location:250 → 337
    Link_domain_HAPLN_module_2; this link domain is found in the second link module of proteins similar to the vertebrate HAPLN (hyaluronan/HA and proteoglycan binding link) protein family which includes cartilage link protein. The link domain is a HA-binding domain. HAPLNs contain two ...
    cd00096
    Location:45 → 47
    Ig; Ig strand A' [structural motif]
    cl11960
    Location:45 → 150
    Ig; Immunoglobulin domain

  3. XM_028845956.1 → XP_028701789.1  hyaluronan and proteoglycan link protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A5F7ZFE0, G7ME04
    Related
    ENSMMUP00000063349.1, ENSMMUT00000095579.1
    Conserved Domains (3) summary
    cd03518
    Location:165 → 258
    Link_domain_HAPLN_module_1; this link domain is found in the first link module of proteins similar to the vertebrate HAPLN (hyaluronan/HA and proteoglycan binding link) protein family which includes cartilage link protein. The link domain is a HA-binding domain. HAPLNs contain two ...
    cd03519
    Location:267 → 354
    Link_domain_HAPLN_module_2; this link domain is found in the second link module of proteins similar to the vertebrate HAPLN (hyaluronan/HA and proteoglycan binding link) protein family which includes cartilage link protein. The link domain is a HA-binding domain. HAPLNs contain two ...
    cl11960
    Location:66 → 166
    Ig; Immunoglobulin domain
Nucleotide Protein
Heading Accession and Version

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