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PHF1 PHD finger protein 1 [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 718337, updated on 17-Aug-2024

Summary

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Official Symbol
PHF1provided by VGNC
Official Full Name
PHD finger protein 1provided by VGNC
Primary source
VGNC:VGNC:75973
Locus tag
EGK_14787
See related
Ensembl:ENSMMUG00000010649
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
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Genomic context

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See PHF1 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
16
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 4 NC_041757.1 (136080591..136086626, complement)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 4 NC_027896.1 (34263501..34269254)

Chromosome 4 - NC_041757.1Genomic Context describing neighboring genes Neighboring gene synaptic Ras GTPase activating protein 1 Neighboring gene cutA divalent cation tolerance homolog Neighboring gene kinesin family member C1 Neighboring gene 60S ribosomal protein L35a pseudogene Neighboring gene death domain associated protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques. Yan G, et al. Nat Biotechnol, 2011 Oct 16. PMID 22002653
  2. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables chromatin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables methylated histone binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chromatin organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
PHD finger protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001257426.1 → NP_001244355.1  PHD finger protein 1

    See identical proteins and their annotated locations for NP_001244355.1

    Status: PROVISIONAL

    Source sequence(s)
    JU321536
    UniProtKB/TrEMBL
    A0A1D5R364, A0A8J8YP53, F7B5U2, G7MRQ6
    Related
    ENSMMUP00000054750.1, ENSMMUT00000061083.2
    Conserved Domains (4) summary
    cd15500
    Location:89 → 139
    PHD1_PHF1; PHD finger 1 found in PHD finger protein1 (PHF1)
    cd15582
    Location:188 → 239
    PHD2_PHF1; PHD finger 2 found in PHD finger protein1 (PHF1)
    pfam14061
    Location:539 → 565
    Mtf2_C; Polycomb-like MTF2 factor 2
    cd20449
    Location:30 → 82
    Tudor_PHF1; Tudor domain found in PHD finger protein1 (PHF1) and similar proteins

RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041757.1 Reference Mmul_10 Primary Assembly

    Range
    136080591..136086626 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015136073.2 → XP_014991559.1  PHD finger protein 1 isoform X2

    Conserved Domains (3) summary
    cd15582
    Location:77 → 128
    PHD2_PHF1; PHD finger 2 found in PHD finger protein1 (PHF1)
    pfam14061
    Location:428 → 454
    Mtf2_C; Polycomb-like MTF2 factor 2
    cl22851
    Location:2 → 28
    PHD_SF; PHD finger superfamily

  2. XM_015136075.2 → XP_014991561.1  PHD finger protein 1 isoform X3

    Conserved Domains (3) summary
    cd15500
    Location:89 → 139
    PHD1_PHF1; PHD finger 1 found in PHD finger protein1 (PHF1)
    cd15582
    Location:188 → 239
    PHD2_PHF1; PHD finger 2 found in PHD finger protein1 (PHF1)
    cd20449
    Location:30 → 82
    Tudor_PHF1; Tudor domain found in PHD finger protein1 (PHF1) and similar proteins

  3. XM_015136076.2 → XP_014991562.1  PHD finger protein 1 isoform X4

    Conserved Domains (4) summary
    cd15500
    Location:89 → 139
    PHD1_PHF1; PHD finger 1 found in PHD finger protein1 (PHF1)
    cd15582
    Location:188 → 239
    PHD2_PHF1; PHD finger 2 found in PHD finger protein1 (PHF1)
    pfam15258
    Location:333 → 426
    FAM222A; Protein family of FAM222A
    pfam18104
    Location:34 → 69
    Tudor_2; Jumonji domain-containing protein 2A Tudor domain

  4. XM_015136072.2 → XP_014991558.1  PHD finger protein 1 isoform X1

    UniProtKB/TrEMBL
    F7B5U2
    Conserved Domains (4) summary
    cd15500
    Location:89 → 139
    PHD1_PHF1; PHD finger 1 found in PHD finger protein1 (PHF1)
    cd15582
    Location:188 → 239
    PHD2_PHF1; PHD finger 2 found in PHD finger protein1 (PHF1)
    pfam14061
    Location:538 → 564
    Mtf2_C; Polycomb-like MTF2 factor 2
    cd20449
    Location:30 → 82
    Tudor_PHF1; Tudor domain found in PHD finger protein1 (PHF1) and similar proteins

RNA

  1. XR_001444209.2 RNA Sequence

  2. XR_001444210.2 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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