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LYST lysosomal trafficking regulator [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 718051, updated on 17-Aug-2024

Summary

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Official Symbol
LYSTprovided by VGNC
Official Full Name
lysosomal trafficking regulatorprovided by VGNC
Primary source
VGNC:VGNC:100005
See related
Ensembl:ENSMMUG00000012729
Gene type
protein coding
RefSeq status
MODEL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
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Genomic context

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See LYST in Genome Data Viewer
Location:
chromosome: 1
Exon count:
57
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 1 NC_041754.1 (13151538..13368498)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 1 NC_027893.1 (211951070..212168194, complement)

Chromosome 1 - NC_041754.1Genomic Context describing neighboring genes Neighboring gene U6 spliceosomal RNA Neighboring gene uncharacterized LOC114678814 Neighboring gene U5 spliceosomal RNA Neighboring gene L-lactate dehydrogenase A chain-like Neighboring gene uncharacterized LOC114678826 Neighboring gene G protein subunit gamma 4 Neighboring gene NADH-ubiquinone oxidoreductase chain 5-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein kinase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein localization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
lysosomal-trafficking regulator
Names
lysosomal-trafficking regulator-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041754.1 Reference Mmul_10 Primary Assembly

    Range
    13151538..13368498
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028849502.1 → XP_028705335.1  lysosomal-trafficking regulator isoform X1

    UniProtKB/TrEMBL
    F7ETS3, H9Z4X5
    Conserved Domains (4) summary
    smart01026
    Location:3133 → 3423
    Beach; Beige/BEACH domain
    cd01201
    Location:3013 → 3118
    PH_BEACH; Pleckstrin homology domain in BEACH domain containing proteins
    sd00039
    Location:3529 → 3566
    7WD40; WD40 repeat [structural motif]
    cl29593
    Location:3530 → 3779
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

  2. XM_015126910.2 → XP_014982396.2  lysosomal-trafficking regulator isoform X1

    UniProtKB/TrEMBL
    F7ETS3, H9Z4X5
    Conserved Domains (4) summary
    smart01026
    Location:3133 → 3423
    Beach; Beige/BEACH domain
    cd01201
    Location:3013 → 3118
    PH_BEACH; Pleckstrin homology domain in BEACH domain containing proteins
    sd00039
    Location:3529 → 3566
    7WD40; WD40 repeat [structural motif]
    cl29593
    Location:3530 → 3779
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

  3. XM_028849508.1 → XP_028705341.1  lysosomal-trafficking regulator isoform X1

    UniProtKB/TrEMBL
    F7ETS3, H9Z4X5
    Conserved Domains (4) summary
    smart01026
    Location:3133 → 3423
    Beach; Beige/BEACH domain
    cd01201
    Location:3013 → 3118
    PH_BEACH; Pleckstrin homology domain in BEACH domain containing proteins
    sd00039
    Location:3529 → 3566
    7WD40; WD40 repeat [structural motif]
    cl29593
    Location:3530 → 3779
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

  4. XM_015126926.2 → XP_014982412.2  lysosomal-trafficking regulator isoform X1

    UniProtKB/TrEMBL
    F7ETS3, H9Z4X5
    Conserved Domains (4) summary
    smart01026
    Location:3133 → 3423
    Beach; Beige/BEACH domain
    cd01201
    Location:3013 → 3118
    PH_BEACH; Pleckstrin homology domain in BEACH domain containing proteins
    sd00039
    Location:3529 → 3566
    7WD40; WD40 repeat [structural motif]
    cl29593
    Location:3530 → 3779
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

  5. XM_028849511.1 → XP_028705344.1  lysosomal-trafficking regulator isoform X1

    UniProtKB/TrEMBL
    F7ETS3, H9Z4X5
    Related
    ENSMMUP00000063509.1, ENSMMUT00000107039.1
    Conserved Domains (4) summary
    smart01026
    Location:3133 → 3423
    Beach; Beige/BEACH domain
    cd01201
    Location:3013 → 3118
    PH_BEACH; Pleckstrin homology domain in BEACH domain containing proteins
    sd00039
    Location:3529 → 3566
    7WD40; WD40 repeat [structural motif]
    cl29593
    Location:3530 → 3779
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

  6. XM_015126914.2 → XP_014982400.2  lysosomal-trafficking regulator isoform X1

    UniProtKB/TrEMBL
    F7ETS3, H9Z4X5
    Related
    ENSMMUP00000016714.4, ENSMMUT00000017849.4
    Conserved Domains (4) summary
    smart01026
    Location:3133 → 3423
    Beach; Beige/BEACH domain
    cd01201
    Location:3013 → 3118
    PH_BEACH; Pleckstrin homology domain in BEACH domain containing proteins
    sd00039
    Location:3529 → 3566
    7WD40; WD40 repeat [structural motif]
    cl29593
    Location:3530 → 3779
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

  7. XM_028849525.1 → XP_028705358.1  lysosomal-trafficking regulator isoform X4

    UniProtKB/TrEMBL
    H9Z4X5
    Conserved Domains (5) summary
    smart01026
    Location:3133 → 3423
    Beach; Beige/BEACH domain
    COG2319
    Location:3477 → 3647
    WD40; WD40 repeat [General function prediction only]
    cd01201
    Location:3013 → 3118
    PH_BEACH; Pleckstrin homology domain in BEACH domain containing proteins
    sd00039
    Location:3529 → 3566
    7WD40; WD40 repeat [structural motif]
    cl29593
    Location:3568 → 3646
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

  8. XM_028849496.1 → XP_028705329.1  lysosomal-trafficking regulator isoform X1

    UniProtKB/TrEMBL
    F7ETS3, H9Z4X5
    Conserved Domains (4) summary
    smart01026
    Location:3133 → 3423
    Beach; Beige/BEACH domain
    cd01201
    Location:3013 → 3118
    PH_BEACH; Pleckstrin homology domain in BEACH domain containing proteins
    sd00039
    Location:3529 → 3566
    7WD40; WD40 repeat [structural motif]
    cl29593
    Location:3530 → 3779
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

  9. XM_015126904.2 → XP_014982390.2  lysosomal-trafficking regulator isoform X1

    UniProtKB/TrEMBL
    F7ETS3, H9Z4X5
    Related
    ENSMMUP00000075657.1, ENSMMUT00000083493.1
    Conserved Domains (4) summary
    smart01026
    Location:3133 → 3423
    Beach; Beige/BEACH domain
    cd01201
    Location:3013 → 3118
    PH_BEACH; Pleckstrin homology domain in BEACH domain containing proteins
    sd00039
    Location:3529 → 3566
    7WD40; WD40 repeat [structural motif]
    cl29593
    Location:3530 → 3779
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

  10. XM_028849518.1 → XP_028705351.1  lysosomal-trafficking regulator isoform X3

    UniProtKB/TrEMBL
    A0A5F8AS42, H9Z4X5
    Related
    ENSMMUP00000080219.1, ENSMMUT00000100892.1
    Conserved Domains (4) summary
    smart01026
    Location:3082 → 3372
    Beach; Beige/BEACH domain
    cd01201
    Location:2962 → 3067
    PH_BEACH; Pleckstrin homology domain in BEACH domain containing proteins
    sd00039
    Location:3478 → 3515
    7WD40; WD40 repeat [structural motif]
    cl29593
    Location:3479 → 3728
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

  11. XM_028849516.1 → XP_028705349.1  lysosomal-trafficking regulator isoform X2

    UniProtKB/TrEMBL
    H9Z4X5
    Conserved Domains (4) summary
    smart01026
    Location:3089 → 3379
    Beach; Beige/BEACH domain
    cd01201
    Location:2969 → 3074
    PH_BEACH; Pleckstrin homology domain in BEACH domain containing proteins
    sd00039
    Location:3485 → 3522
    7WD40; WD40 repeat [structural motif]
    cl29593
    Location:3486 → 3735
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

  12. XM_015126921.2 → XP_014982407.2  lysosomal-trafficking regulator isoform X1

    UniProtKB/TrEMBL
    F7ETS3, H9Z4X5
    Conserved Domains (4) summary
    smart01026
    Location:3133 → 3423
    Beach; Beige/BEACH domain
    cd01201
    Location:3013 → 3118
    PH_BEACH; Pleckstrin homology domain in BEACH domain containing proteins
    sd00039
    Location:3529 → 3566
    7WD40; WD40 repeat [structural motif]
    cl29593
    Location:3530 → 3779
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
Nucleotide Protein
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