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BCL11A BCL11 transcription factor A [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 717675, updated on 17-Aug-2024

Summary

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Official Symbol
BCL11Aprovided by VGNC
Official Full Name
BCL11 transcription factor Aprovided by VGNC
Primary source
VGNC:VGNC:70055
See related
Ensembl:ENSMMUG00000011303
Gene type
protein coding
RefSeq status
MODEL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
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Genomic context

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See BCL11A in Genome Data Viewer
Location:
chromosome: 13
Exon count:
9
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 13 NC_041766.1 (48272312..48373771)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 13 NC_027905.1 (61237810..61338060, complement)

Chromosome 13 - NC_041766.1Genomic Context describing neighboring genes Neighboring gene activated RNA polymerase II transcriptional coactivator p15 pseudogene Neighboring gene 60S ribosomal protein L26 pseudogene Neighboring gene uncharacterized LOC114671962 Neighboring gene uncharacterized LOC106992966 Neighboring gene U1 spliceosomal RNA

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of dendrite development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
B-cell lymphoma/leukemia 11A
Names
B cell CLL/lymphoma 11A
BAF chromatin remodeling complex subunit BCL11A
BCL11A, BAF complex component

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041766.1 Reference Mmul_10 Primary Assembly

    Range
    48272312..48373771
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015112435.2 → XP_014967921.1  B-cell lymphoma/leukemia 11A isoform X1

    UniProtKB/TrEMBL
    A0A5F8AA68, H9Z008
    Conserved Domains (3) summary
    sd00017
    Location:744 → 764
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:743 → 764
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:391 → 416
    zf-H2C2_2; Zinc-finger double domain

  2. XM_015112438.2 → XP_014967924.1  B-cell lymphoma/leukemia 11A isoform X4

    UniProtKB/TrEMBL
    A0A5F8AA68, A0A5F8AKC2
    Related
    ENSMMUP00000077389.1, ENSMMUT00000092218.1
    Conserved Domains (3) summary
    sd00017
    Location:710 → 730
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:709 → 730
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:357 → 382
    zf-H2C2_2; Zinc-finger double domain

  3. XM_015112440.2 → XP_014967926.1  B-cell lymphoma/leukemia 11A isoform X5

    UniProtKB/TrEMBL
    A0A5F8AA68
    Conserved Domains (4) summary
    sd00017
    Location:345 → 365
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00019
    Location:710 → 730
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:709 → 730
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:357 → 382
    zf-H2C2_2; Zinc-finger double domain

  4. XM_015112437.2 → XP_014967923.1  B-cell lymphoma/leukemia 11A isoform X3

    UniProtKB/TrEMBL
    A0A5F8AA68
    Conserved Domains (4) summary
    sd00017
    Location:379 → 399
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00019
    Location:744 → 764
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:743 → 764
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:391 → 416
    zf-H2C2_2; Zinc-finger double domain

  5. XM_015112443.2 → XP_014967929.1  B-cell lymphoma/leukemia 11A isoform X8

    UniProtKB/TrEMBL
    A0A5F8AA68, F6UND0, H9ZA61
    Related
    ENSMMUP00000014826.3, ENSMMUT00000015825.4
    Conserved Domains (3) summary
    sd00017
    Location:379 → 399
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:378 → 399
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:391 → 416
    zf-H2C2_2; Zinc-finger double domain

  6. XM_015112444.2 → XP_014967930.1  B-cell lymphoma/leukemia 11A isoform X10

    UniProtKB/TrEMBL
    H9FVW4

  7. XM_028832461.1 → XP_028688294.1  B-cell lymphoma/leukemia 11A isoform X7

    UniProtKB/TrEMBL
    G7NA44
    Conserved Domains (3) summary
    sd00017
    Location:692 → 712
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:691 → 712
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:339 → 364
    zf-H2C2_2; Zinc-finger double domain

  8. XM_015112441.2 → XP_014967927.1  B-cell lymphoma/leukemia 11A isoform X6

    UniProtKB/TrEMBL
    G7NA44
    Conserved Domains (4) summary
    sd00017
    Location:343 → 363
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00019
    Location:708 → 728
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:707 → 728
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:355 → 380
    zf-H2C2_2; Zinc-finger double domain

  9. XM_015112436.2 → XP_014967922.1  B-cell lymphoma/leukemia 11A isoform X2

    UniProtKB/TrEMBL
    G7NA44
    Conserved Domains (3) summary
    sd00017
    Location:742 → 762
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:741 → 762
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:389 → 414
    zf-H2C2_2; Zinc-finger double domain

  10. XM_028832462.1 → XP_028688295.1  B-cell lymphoma/leukemia 11A isoform X9

    UniProtKB/TrEMBL
    G7NA44
    Related
    ENSMMUP00000076389.1, ENSMMUT00000090147.1
    Conserved Domains (3) summary
    sd00019
    Location:377 → 397
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:376 → 397
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:389 → 414
    zf-H2C2_2; Zinc-finger double domain

  11. XM_015112442.2 → XP_014967928.1  B-cell lymphoma/leukemia 11A isoform X7

    UniProtKB/TrEMBL
    G7NA44
    Related
    ENSMMUP00000074838.1, ENSMMUT00000097395.1
    Conserved Domains (3) summary
    sd00017
    Location:692 → 712
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:691 → 712
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:339 → 364
    zf-H2C2_2; Zinc-finger double domain
Nucleotide Protein
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