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EFCAB5 EF-hand calcium binding domain 5 [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 717087, updated on 17-Aug-2024

Summary

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Official Symbol
EFCAB5provided by VGNC
Official Full Name
EF-hand calcium binding domain 5provided by VGNC
Primary source
VGNC:VGNC:72103
See related
Ensembl:ENSMMUG00000012118
Gene type
protein coding
RefSeq status
MODEL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
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Genomic context

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See EFCAB5 in Genome Data Viewer
Location:
chromosome: 16
Exon count:
24
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 16 NC_041769.1 (25586266..25771319)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 16 NC_027908.1 (23988107..24175350)

Chromosome 16 - NC_041769.1Genomic Context describing neighboring genes Neighboring gene slingshot protein phosphatase 2 Neighboring gene small nucleolar RNA SNORA70 Neighboring gene small nucleolar RNA U13 Neighboring gene syntaxin-18 pseudogene Neighboring gene uncharacterized LOC114673084 Neighboring gene microRNA mir-423 Neighboring gene nuclear speckle splicing regulatory protein 1 Neighboring gene solute carrier family 6 member 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
EF-hand calcium-binding domain-containing protein 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041769.1 Reference Mmul_10 Primary Assembly

    Range
    25586266..25771319
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015118962.2 → XP_014974448.1  EF-hand calcium-binding domain-containing protein 5 isoform X3

    UniProtKB/TrEMBL
    G7NGS7
    Conserved Domains (3) summary
    pfam05186
    Location:50 → 102
    Dpy-30; Dpy-30 motif
    pfam14797
    Location:413 → 570
    SEEEED; Serine-rich region of AP3B1, clathrin-adaptor complex
    cl21515
    Location:954 → 1046
    GAF; GAF domain

  2. XM_015118959.2 → XP_014974445.1  EF-hand calcium-binding domain-containing protein 5 isoform X1

    UniProtKB/TrEMBL
    G7NGS7
    Related
    ENSMMUP00000054325.2, ENSMMUT00000078278.2
    Conserved Domains (3) summary
    pfam05186
    Location:170 → 222
    Dpy-30; Dpy-30 motif
    pfam14797
    Location:533 → 690
    SEEEED; Serine-rich region of AP3B1, clathrin-adaptor complex
    cl21515
    Location:1074 → 1166
    GAF; GAF domain

  3. XM_015118961.2 → XP_014974447.1  EF-hand calcium-binding domain-containing protein 5 isoform X2

    UniProtKB/TrEMBL
    G7NGS7
    Conserved Domains (3) summary
    pfam05186
    Location:170 → 222
    Dpy-30; Dpy-30 motif
    pfam14797
    Location:533 → 690
    SEEEED; Serine-rich region of AP3B1, clathrin-adaptor complex
    cl21515
    Location:1074 → 1166
    GAF; GAF domain

RNA

  1. XR_003723678.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases
Research Materials