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NOVA1 NOVA alternative splicing regulator 1 [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 716705, updated on 17-Aug-2024

Summary

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Official Symbol
NOVA1provided by VGNC
Official Full Name
NOVA alternative splicing regulator 1provided by VGNC
Primary source
VGNC:VGNC:75373
See related
Ensembl:ENSMMUG00000004271
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
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Genomic context

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See NOVA1 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
11
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 7 NC_041760.1 (88523212..88678433, complement)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 7 NC_027899.1 (87843410..87997633, complement)

Chromosome 7 - NC_041760.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC114679543 Neighboring gene uncharacterized LOC114679275 Neighboring gene ubiquitin-40S ribosomal protein S27a pseudogene Neighboring gene leydig cell tumor 10 kDa protein homolog pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of alternative mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
RNA-binding protein Nova-1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001261800.1 → NP_001248729.1  RNA-binding protein Nova-1

    See identical proteins and their annotated locations for NP_001248729.1

    Status: PROVISIONAL

    Source sequence(s)
    JU334686
    UniProtKB/TrEMBL
    G7MXE0, H9FUY0
    Related
    ENSMMUP00000074190.1, ENSMMUT00000097671.1
    Conserved Domains (3) summary
    cd09031
    Location:422 → 492
    KH-I_NOVA_rpt3; third type I K homology (KH) RNA-binding domain found in the family of neuro-oncological ventral antigen (Nova)
    cd22435
    Location:49 → 121
    KH-I_NOVA_rpt1; first type I K homology (KH) RNA-binding domain found in the family of neuro-oncological ventral antigen (Nova)
    cd22436
    Location:172 → 241
    KH-I_NOVA_rpt2; second type I K homology (KH) RNA-binding domain found in the family of neuro-oncological ventral antigen (Nova)

RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041760.1 Reference Mmul_10 Primary Assembly

    Range
    88523212..88678433 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015143360.2 → XP_014998846.1  RNA-binding protein Nova-1 isoform X1

    UniProtKB/TrEMBL
    F6ZSR6, G7MXE0, H9FUX9
    Related
    ENSMMUP00000005716.4, ENSMMUT00000006072.4
    Conserved Domains (3) summary
    cd09031
    Location:398 → 468
    KH-I_NOVA_rpt3; third type I K homology (KH) RNA-binding domain found in the family of neuro-oncological ventral antigen (Nova)
    cd22435
    Location:49 → 121
    KH-I_NOVA_rpt1; first type I K homology (KH) RNA-binding domain found in the family of neuro-oncological ventral antigen (Nova)
    cd22436
    Location:148 → 217
    KH-I_NOVA_rpt2; second type I K homology (KH) RNA-binding domain found in the family of neuro-oncological ventral antigen (Nova)

  2. XM_028850541.1 → XP_028706374.1  RNA-binding protein Nova-1 isoform X5

    Conserved Domains (2) summary
    cd09031
    Location:276 → 346
    KH-I_NOVA_rpt3; third type I K homology (KH) RNA-binding domain found in the family of neuro-oncological ventral antigen (Nova)
    cd22436
    Location:26 → 95
    KH-I_NOVA_rpt2; second type I K homology (KH) RNA-binding domain found in the family of neuro-oncological ventral antigen (Nova)

  3. XM_028850536.1 → XP_028706369.1  RNA-binding protein Nova-1 isoform X4

    UniProtKB/TrEMBL
    F6ZSS2, F6ZST1
    Related
    ENSMMUP00000005715.4, ENSMMUT00000006071.4
    Conserved Domains (2) summary
    cd09031
    Location:300 → 370
    KH-I_NOVA_rpt3; third type I K homology (KH) RNA-binding domain found in the family of neuro-oncological ventral antigen (Nova)
    cd22436
    Location:50 → 119
    KH-I_NOVA_rpt2; second type I K homology (KH) RNA-binding domain found in the family of neuro-oncological ventral antigen (Nova)

  4. XM_028850535.1 → XP_028706368.1  RNA-binding protein Nova-1 isoform X3

    UniProtKB/TrEMBL
    G7MXE0
    Conserved Domains (3) summary
    cd09031
    Location:361 → 431
    KH-I_NOVA_rpt3; third type I K homology (KH) RNA-binding domain found in the family of neuro-oncological ventral antigen (Nova)
    cd22435
    Location:12 → 84
    KH-I_NOVA_rpt1; first type I K homology (KH) RNA-binding domain found in the family of neuro-oncological ventral antigen (Nova)
    cd22436
    Location:111 → 180
    KH-I_NOVA_rpt2; second type I K homology (KH) RNA-binding domain found in the family of neuro-oncological ventral antigen (Nova)

  5. XM_015143361.2 → XP_014998847.1  RNA-binding protein Nova-1 isoform X2

    UniProtKB/TrEMBL
    G7MXE0
    Conserved Domains (3) summary
    cd09031
    Location:385 → 455
    KH-I_NOVA_rpt3; third type I K homology (KH) RNA-binding domain found in the family of neuro-oncological ventral antigen (Nova)
    cd22435
    Location:12 → 84
    KH-I_NOVA_rpt1; first type I K homology (KH) RNA-binding domain found in the family of neuro-oncological ventral antigen (Nova)
    cd22436
    Location:135 → 204
    KH-I_NOVA_rpt2; second type I K homology (KH) RNA-binding domain found in the family of neuro-oncological ventral antigen (Nova)

  6. XM_028850537.1 → XP_028706370.1  RNA-binding protein Nova-1 isoform X4

    UniProtKB/TrEMBL
    F6ZSS2, F6ZST1
    Conserved Domains (2) summary
    cd09031
    Location:300 → 370
    KH-I_NOVA_rpt3; third type I K homology (KH) RNA-binding domain found in the family of neuro-oncological ventral antigen (Nova)
    cd22436
    Location:50 → 119
    KH-I_NOVA_rpt2; second type I K homology (KH) RNA-binding domain found in the family of neuro-oncological ventral antigen (Nova)

  7. XM_028850540.1 → XP_028706373.1  RNA-binding protein Nova-1 isoform X4

    UniProtKB/TrEMBL
    F6ZSS2, F6ZST1
    Conserved Domains (2) summary
    cd09031
    Location:300 → 370
    KH-I_NOVA_rpt3; third type I K homology (KH) RNA-binding domain found in the family of neuro-oncological ventral antigen (Nova)
    cd22436
    Location:50 → 119
    KH-I_NOVA_rpt2; second type I K homology (KH) RNA-binding domain found in the family of neuro-oncological ventral antigen (Nova)

  8. XM_028850538.1 → XP_028706371.1  RNA-binding protein Nova-1 isoform X4

    UniProtKB/TrEMBL
    F6ZSS2, F6ZST1
    Conserved Domains (2) summary
    cd09031
    Location:300 → 370
    KH-I_NOVA_rpt3; third type I K homology (KH) RNA-binding domain found in the family of neuro-oncological ventral antigen (Nova)
    cd22436
    Location:50 → 119
    KH-I_NOVA_rpt2; second type I K homology (KH) RNA-binding domain found in the family of neuro-oncological ventral antigen (Nova)

  9. XM_028850539.1 → XP_028706372.1  RNA-binding protein Nova-1 isoform X4

    UniProtKB/TrEMBL
    F6ZSS2, F6ZST1
    Related
    ENSMMUP00000005714.4, ENSMMUT00000006070.4
    Conserved Domains (2) summary
    cd09031
    Location:300 → 370
    KH-I_NOVA_rpt3; third type I K homology (KH) RNA-binding domain found in the family of neuro-oncological ventral antigen (Nova)
    cd22436
    Location:50 → 119
    KH-I_NOVA_rpt2; second type I K homology (KH) RNA-binding domain found in the family of neuro-oncological ventral antigen (Nova)

  10. XM_028850542.1 → XP_028706375.1  RNA-binding protein Nova-1 isoform X6

    UniProtKB/TrEMBL
    A0A5F8A7J3
    Related
    ENSMMUP00000073914.1, ENSMMUT00000088115.1
    Conserved Domains (1) summary
    cd02396
    Location:51 → 117
    PCBP_like_KH; K homology RNA-binding domain, PCBP_like. Members of this group possess KH domains in a tandem arrangement. Most members, similar to the poly(C) binding proteins (PCBPs) and Nova, containing three KH domains, with the first and second domains, which are ...
Nucleotide Protein
Heading Accession and Version

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