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KDM3B lysine demethylase 3B [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 716648, updated on 17-Aug-2024

Summary

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Official Symbol
KDM3Bprovided by VGNC
Official Full Name
lysine demethylase 3Bprovided by VGNC
Primary source
VGNC:VGNC:73823
See related
Ensembl:ENSMMUG00000000455
Gene type
protein coding
RefSeq status
MODEL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
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Genomic context

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See KDM3B in Genome Data Viewer
Location:
chromosome: 6
Exon count:
24
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 6 NC_041759.1 (135758264..135845001)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 6 NC_027898.1 (136077506..136163686)

Chromosome 6 - NC_041759.1Genomic Context describing neighboring genes Neighboring gene cell division cycle 25C Neighboring gene family with sequence similarity 53 member C Neighboring gene uncharacterized LOC114678715 Neighboring gene receptor accessory protein 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chromatin DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables histone H3K9 demethylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription coregulator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of chromatin IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of histone deacetylase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
lysine-specific demethylase 3B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041759.1 Reference Mmul_10 Primary Assembly

    Range
    135758264..135845001
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015140983.2 → XP_014996469.1  lysine-specific demethylase 3B

    UniProtKB/TrEMBL
    F6YRB3, F7F8C0, I0FSK5
    Related
    ENSMMUP00000000618.3, ENSMMUT00000000668.4
    Conserved Domains (2) summary
    smart00558
    Location:1502 → 1574
    JmjC; A domain family that is part of the cupin metalloenzyme superfamily
    cl21464
    Location:1599 → 1704
    cupin_like; Conserved domain found in cupin and related proteins
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials