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UPF3A UPF3A regulator of nonsense mediated mRNA decay [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 716601, updated on 17-Aug-2024

Summary

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Official Symbol
UPF3Aprovided by VGNC
Official Full Name
UPF3A regulator of nonsense mediated mRNA decayprovided by VGNC
Primary source
VGNC:VGNC:79244
See related
Ensembl:ENSMMUG00000007449
Gene type
protein coding
RefSeq status
MODEL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
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Genomic context

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See UPF3A in Genome Data Viewer
Location:
chromosome: 17
Exon count:
12
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 17 NC_041770.1 (95349819..95374209)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 17 NC_027909.1 (95606251..95630128)

Chromosome 17 - NC_041770.1Genomic Context describing neighboring genes Neighboring gene RAS p21 protein activator 3 Neighboring gene cell division cycle 16 Neighboring gene uncharacterized LOC106994408 Neighboring gene chromosome alignment maintaining phosphoprotein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables telomeric DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of translation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
regulator of nonsense transcripts 3A
Names
UPF3 regulator of nonsense transcripts homolog A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041770.1 Reference Mmul_10 Primary Assembly

    Range
    95349819..95374209
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028837407.1 → XP_028693240.1  regulator of nonsense transcripts 3A isoform X7

    Conserved Domains (1) summary
    cd12727
    Location:66 → 149
    RRM_like_Smg4_UPF3A; RNA recognition motif-like Smg4_UPF3 domain in up-frameshift suppressor 3 homolog A (Upf3A)

  2. XM_028837406.1 → XP_028693239.1  regulator of nonsense transcripts 3A isoform X6

    UniProtKB/TrEMBL
    H9EZB0
    Conserved Domains (1) summary
    cd12727
    Location:66 → 152
    RRM_like_Smg4_UPF3A; RNA recognition motif-like Smg4_UPF3 domain in up-frameshift suppressor 3 homolog A (Upf3A)

  3. XM_028837405.1 → XP_028693238.1  regulator of nonsense transcripts 3A isoform X5

    UniProtKB/TrEMBL
    A0A1D5QTR3, F7DV73
    Related
    ENSMMUP00000035984.3, ENSMMUT00000042971.3

  4. XM_028837400.1 → XP_028693233.1  regulator of nonsense transcripts 3A isoform X1

    UniProtKB/TrEMBL
    F6SWJ4
    Related
    ENSMMUP00000009769.4, ENSMMUT00000010408.4
    Conserved Domains (1) summary
    pfam03467
    Location:65 → 225
    Smg4_UPF3; Smg-4/UPF3 family

  5. XM_028837402.1 → XP_028693235.1  regulator of nonsense transcripts 3A isoform X3

    Conserved Domains (1) summary
    cd12727
    Location:66 → 152
    RRM_like_Smg4_UPF3A; RNA recognition motif (RRM)-like Smg4_UPF3 domain in up-frameshift suppressor 3 homolog A (Upf3A)

  6. XM_028837401.1 → XP_028693234.1  regulator of nonsense transcripts 3A isoform X2

    Conserved Domains (1) summary
    cd12727
    Location:66 → 149
    RRM_like_Smg4_UPF3A; RNA recognition motif-like Smg4_UPF3 domain in up-frameshift suppressor 3 homolog A (Upf3A)

  7. XM_028837403.1 → XP_028693236.1  regulator of nonsense transcripts 3A isoform X4

    UniProtKB/TrEMBL
    G7NJP7
    Conserved Domains (1) summary
    cl17169
    Location:10 → 95
    RRM_SF; RNA recognition motif (RRM) superfamily

  8. XM_028837404.1 → XP_028693237.1  regulator of nonsense transcripts 3A isoform X5

    UniProtKB/TrEMBL
    A0A1D5QTR3, F7DV73
    Related
    ENSMMUP00000051443.2, ENSMMUT00000073276.2

RNA

  1. XR_003724243.1 RNA Sequence

  2. XR_003724241.1 RNA Sequence

  3. XR_003724242.1 RNA Sequence

Nucleotide Protein
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