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STX12 syntaxin 12 [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 716455, updated on 5-Mar-2024

Summary

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Gene symbol
STX12
Gene description
syntaxin 12
See related
Ensembl:ENSMMUG00000012252
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
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Genomic context

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See STX12 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
10
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 1 NC_041754.1 (196898581..196949481, complement)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 1 NC_027893.1 (26654283..26705987)

Chromosome 1 - NC_041754.1Genomic Context describing neighboring genes Neighboring gene protein phosphatase 1 regulatory subunit 8 Neighboring gene small Cajal body-specific RNA 1 Neighboring gene U6 spliceosomal RNA Neighboring gene family with sequence similarity 76 member A Neighboring gene ribulose-phosphate 3-epimerase-like Neighboring gene thioredoxin domain-containing protein 17 pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables SNAP receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables SNARE binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in intracellular protein transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vesicle docking IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vesicle fusion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of SNARE complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endomembrane system IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in postsynaptic recycling endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in synaptic vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in synaptic vesicle membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
syntaxin-12

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001265898.1 → NP_001252827.1  syntaxin-12

    See identical proteins and their annotated locations for NP_001252827.1

    Status: PROVISIONAL

    Source sequence(s)
    JU474997
    UniProtKB/TrEMBL
    A0A1D5Q3W5, G7MHZ1, H9Z784
    Related
    ENSMMUP00000042728.2, ENSMMUT00000059733.2
    Conserved Domains (3) summary
    cd00179
    Location:19 → 164
    SynN; Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may ...
    cd15876
    Location:181 → 247
    SNARE_syntaxin12; SNARE motif of syntaxin 12
    pfam00804
    Location:26 → 213
    Syntaxin; Syntaxin

RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041754.1 Reference Mmul_10 Primary Assembly

    Range
    196898581..196949481 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015132342.2 → XP_014987828.1  syntaxin-12 isoform X1

    UniProtKB/TrEMBL
    F6V089, F7GMG0
    Related
    ENSMMUP00000040477.3, ENSMMUT00000047443.3
    Conserved Domains (3) summary
    cd00179
    Location:19 → 164
    SynN; Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may ...
    cd15876
    Location:181 → 244
    SNARE_syntaxin12; SNARE motif of syntaxin 12
    pfam00804
    Location:26 → 213
    Syntaxin; Syntaxin
Nucleotide Protein
Heading Accession and Version

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