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CLN8 CLN8 transmembrane ER and ERGIC protein [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 716441, updated on 17-Aug-2024

Summary

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Official Symbol
CLN8provided by VGNC
Official Full Name
CLN8 transmembrane ER and ERGIC proteinprovided by VGNC
Primary source
VGNC:VGNC:99469
Locus tag
EGK_18645
See related
Ensembl:ENSMMUG00000009470
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
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Genomic context

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See CLN8 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
7
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 8 NC_041761.1 (2265092..2289837)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 8 NC_027900.1 (1506561..1530955)

Chromosome 8 - NC_041761.1Genomic Context describing neighboring genes Neighboring gene DLG associated protein 2 Neighboring gene uncharacterized LOC114680158 Neighboring gene uncharacterized LOC106999645 Neighboring gene uncharacterized LOC114680159 Neighboring gene uncharacterized LOC106999647 Neighboring gene uncharacterized LOC114680160

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques. Yan G, et al. Nat Biotechnol, 2011 Oct 16. PMID 22002653
  2. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in lipid homeostasis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein CLN8

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001194050.2 → NP_001180979.1  protein CLN8

    See identical proteins and their annotated locations for NP_001180979.1

    Status: PROVISIONAL

    Source sequence(s)
    QNVO02000449
    UniProtKB/TrEMBL
    A0A8J8YKH2, F7A8P7, G7N0E6
    Related
    ENSMMUP00000046564.1, ENSMMUT00000060749.2
    Conserved Domains (1) summary
    smart00724
    Location:64 → 262
    TLC; TRAM, LAG1 and CLN8 homology domains

RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041761.1 Reference Mmul_10 Primary Assembly

    Range
    2265092..2289837
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015144679.2 → XP_015000165.1  protein CLN8 isoform X1

    UniProtKB/TrEMBL
    A0A8J8YKH2, F7A8P7, G7N0E6
    Conserved Domains (1) summary
    smart00724
    Location:64 → 262
    TLC; TRAM, LAG1 and CLN8 homology domains

  2. XM_015144681.2 → XP_015000167.1  protein CLN8 isoform X1

    UniProtKB/TrEMBL
    A0A8J8YKH2, F7A8P7, G7N0E6
    Related
    ENSMMUP00000074007.1, ENSMMUT00000088290.1
    Conserved Domains (1) summary
    smart00724
    Location:64 → 262
    TLC; TRAM, LAG1 and CLN8 homology domains

  3. XM_015144678.2 → XP_015000164.1  protein CLN8 isoform X1

    UniProtKB/TrEMBL
    A0A8J8YKH2, F7A8P7, G7N0E6
    Related
    ENSMMUP00000012384.2, ENSMMUT00000013213.4
    Conserved Domains (1) summary
    smart00724
    Location:64 → 262
    TLC; TRAM, LAG1 and CLN8 homology domains
Nucleotide Protein
Heading Accession and Version

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