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SUPT6H SPT6 homolog, histone chaperone and transcription elongation factor [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 716230, updated on 17-Aug-2024

Summary

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Official Symbol
SUPT6Hprovided by VGNC
Official Full Name
SPT6 homolog, histone chaperone and transcription elongation factorprovided by VGNC
Primary source
VGNC:VGNC:78057
Locus tag
EGK_08333
See related
Ensembl:ENSMMUG00000004708
Gene type
protein coding
RefSeq status
MODEL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
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Genomic context

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See SUPT6H in Genome Data Viewer
Location:
chromosome: 16
Exon count:
38
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 16 NC_041769.1 (24290562..24331525)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 16 NC_027908.1 (22682340..22722139)

Chromosome 16 - NC_041769.1Genomic Context describing neighboring genes Neighboring gene ribosomal protein S6 kinase related Neighboring gene KIAA0100 Neighboring gene stromal cell derived factor 2 Neighboring gene protein interacting with cyclin A1 Neighboring gene RAB34, member RAS oncogene family

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables histone binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nucleosome binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nucleosome organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of transcription elongation by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transcription elongation by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transcription elongation-coupled chromatin remodeling IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of transcription elongation factor complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription elongation factor SPT6
Names
suppressor of Ty 6 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041769.1 Reference Mmul_10 Primary Assembly

    Range
    24290562..24331525
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015118904.2 → XP_014974390.1  transcription elongation factor SPT6 isoform X1

    UniProtKB/TrEMBL
    A0A5F7ZLB3, A0A663D9I9, A0A8J8Y836, F6RDZ4, G7NGK3
    Related
    ENSMMUP00000006255.3, ENSMMUT00000006649.4
    Conserved Domains (2) summary
    COG2183
    Location:372 → 1353
    Tex; Transcriptional accessory protein Tex/SPT6 [Transcription]
    pfam14633
    Location:1304 → 1514
    SH2_2; SH2 domain

  2. XM_028836136.1 → XP_028691969.1  transcription elongation factor SPT6 isoform X1

    UniProtKB/TrEMBL
    A0A5F7ZLB3, A0A663D9I9, A0A8J8Y836, F6RDZ4, G7NGK3
    Conserved Domains (2) summary
    COG2183
    Location:372 → 1353
    Tex; Transcriptional accessory protein Tex/SPT6 [Transcription]
    pfam14633
    Location:1304 → 1514
    SH2_2; SH2 domain

  3. XM_028836137.1 → XP_028691970.1  transcription elongation factor SPT6 isoform X2

    UniProtKB/TrEMBL
    A0A5F8A9K6
    Related
    ENSMMUP00000073646.1, ENSMMUT00000080688.1
    Conserved Domains (2) summary
    COG2183
    Location:249 → 1230
    Tex; Transcriptional accessory protein Tex/SPT6 [Transcription]
    pfam14633
    Location:1185 → 1389
    SH2_2; SH2 domain
Nucleotide Protein
Heading Accession and Version

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