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PLOD2 procollagen-lysine,2-oxoglutarate 5-dioxygenase 2 [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 715820, updated on 17-Aug-2024

Summary

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Official Symbol
PLOD2provided by VGNC
Official Full Name
procollagen-lysine,2-oxoglutarate 5-dioxygenase 2provided by VGNC
Primary source
VGNC:VGNC:76176
See related
Ensembl:ENSMMUG00000011577
Gene type
protein coding
RefSeq status
MODEL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
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Genomic context

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See PLOD2 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
22
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 2 NC_041755.1 (48230069..48322438, complement)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 2 NC_027894.1 (155574254..155665943)

Chromosome 2 - NC_041755.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC114676131 Neighboring gene ganglioside GM2 activator pseudogene Neighboring gene uncharacterized LOC114676269 Neighboring gene phospholipid scramblase 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables L-ascorbic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables iron ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables procollagen-lysine 5-dioxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in peptidyl-lysine hydroxylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
procollagen-lysine,2-oxoglutarate 5-dioxygenase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041755.1 Reference Mmul_10 Primary Assembly

    Range
    48230069..48322438 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015131980.2 → XP_014987466.1  procollagen-lysine,2-oxoglutarate 5-dioxygenase 2 isoform X2

    UniProtKB/TrEMBL
    H9FVX6
    Related
    ENSMMUP00000015203.4, ENSMMUT00000016221.4
    Conserved Domains (1) summary
    smart00702
    Location:572 → 735
    P4Hc; Prolyl 4-hydroxylase alpha subunit homologues

  2. XM_015131979.2 → XP_014987465.1  procollagen-lysine,2-oxoglutarate 5-dioxygenase 2 isoform X1

    UniProtKB/TrEMBL
    H9FVX5
    Related
    ENSMMUP00000061726.1, ENSMMUT00000110244.1
    Conserved Domains (1) summary
    smart00702
    Location:593 → 756
    P4Hc; Prolyl 4-hydroxylase alpha subunit homologues

  3. XM_015131982.2 → XP_014987468.1  procollagen-lysine,2-oxoglutarate 5-dioxygenase 2 isoform X4

    UniProtKB/TrEMBL
    G7MJK6
    Conserved Domains (1) summary
    smart00702
    Location:538 → 701
    P4Hc; Prolyl 4-hydroxylase alpha subunit homologues

  4. XM_015131981.2 → XP_014987467.1  procollagen-lysine,2-oxoglutarate 5-dioxygenase 2 isoform X3

    UniProtKB/TrEMBL
    F6WSU7, G7MJK6
    Related
    ENSMMUP00000038562.3, ENSMMUT00000045528.3
    Conserved Domains (1) summary
    smart00702
    Location:540 → 703
    P4Hc; Prolyl 4-hydroxylase alpha subunit homologues
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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