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XPA XPA, DNA damage recognition and repair factor [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 715705, updated on 17-Aug-2024

Summary

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Official Symbol
XPAprovided by VGNC
Official Full Name
XPA, DNA damage recognition and repair factorprovided by VGNC
Primary source
VGNC:VGNC:78808
See related
Ensembl:ENSMMUG00000012282
Gene type
protein coding
RefSeq status
MODEL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
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Genomic context

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See XPA in Genome Data Viewer
Location:
chromosome: 15
Exon count:
9
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 15 NC_041768.1 (45223766..45247004)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 15 NC_027907.1 (41935961..41979381)

Chromosome 15 - NC_041768.1Genomic Context describing neighboring genes Neighboring gene forkhead box E1 Neighboring gene uncharacterized LOC114672759 Neighboring gene nuclear cap binding protein subunit 1 Neighboring gene uncharacterized LOC106993680 Neighboring gene thiosulfate sulfurtransferase like domain containing 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables damaged DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in UV-damage excision repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in base-excision repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nucleotide-excision repair involved in interstrand cross-link repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nucleotide-excision repair, DNA damage recognition IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of nucleotide-excision repair factor 1 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
DNA repair protein complementing XP-A cells

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041768.1 Reference Mmul_10 Primary Assembly

    Range
    45223766..45247004
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015117241.2 → XP_014972727.1  DNA repair protein complementing XP-A cells isoform X3

    Conserved Domains (1) summary
    cd21076
    Location:43 → 149
    DBD_XPA; DNA-binding domain found in DNA repair protein complementing XP-A cells (XPA) and similar proteins

  2. XM_028835043.1 → XP_028690876.1  DNA repair protein complementing XP-A cells isoform X3

    Conserved Domains (1) summary
    cd21076
    Location:43 → 149
    DBD_XPA; DNA-binding domain found in DNA repair protein complementing XP-A cells (XPA) and similar proteins

  3. XM_015117236.2 → XP_014972722.1  DNA repair protein complementing XP-A cells isoform X1

    Conserved Domains (2) summary
    pfam01286
    Location:104 → 133
    XPA_N; XPA protein N-terminal
    pfam05181
    Location:135 → 186
    XPA_C; XPA protein C-terminus

  4. XM_001114093.4 → XP_001114093.1  DNA repair protein complementing XP-A cells isoform X2

    UniProtKB/TrEMBL
    A0A5F8AFX2, F7DRV0
    Related
    ENSMMUP00000076774.1, ENSMMUT00000100364.1
    Conserved Domains (3) summary
    TIGR00598
    Location:105 → 273
    rad14; DNA repair protein
    pfam01286
    Location:104 → 133
    XPA_N; XPA protein N-terminal
    pfam05181
    Location:135 → 186
    XPA_C; XPA protein C-terminus

  5. XM_015117242.2 → XP_014972728.1  DNA repair protein complementing XP-A cells isoform X4

    Conserved Domains (2) summary
    pfam01286
    Location:104 → 133
    XPA_N; XPA protein N-terminal
    pfam05181
    Location:135 → 186
    XPA_C; XPA protein C-terminus

  6. XM_028835044.1 → XP_028690877.1  DNA repair protein complementing XP-A cells isoform X3

    Conserved Domains (1) summary
    cd21076
    Location:43 → 149
    DBD_XPA; DNA-binding domain found in DNA repair protein complementing XP-A cells (XPA) and similar proteins
Nucleotide Protein
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