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IFT56 intraflagellar transport 56 [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 715688, updated on 17-Aug-2024

Summary

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Official Symbol
IFT56provided by VGNC
Official Full Name
intraflagellar transport 56provided by VGNC
Primary source
VGNC:VGNC:79341
See related
Ensembl:ENSMMUG00000013645
Gene type
protein coding
RefSeq status
MODEL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Also known as
TTC26
Orthologs
human mouse all
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Genomic context

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See IFT56 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
18
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 3 NC_041756.1 (165553663..165617383)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 3 NC_027895.1 (165484197..165548274)

Chromosome 3 - NC_041756.1Genomic Context describing neighboring genes Neighboring gene zinc finger CCCH-type containing, antiviral 1 like Neighboring gene zinc finger CCCH-type containing, antiviral 1 Neighboring gene male-specific lethal 3 homolog pseudogene Neighboring gene rRNA-processing protein FCF1 homolog pseudogene Neighboring gene microRNA mir-7186

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables intraciliary transport particle B binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in intraciliary anterograde transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intraciliary transport involved in cilium assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in ciliary basal body IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in ciliary base IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of intraciliary transport particle B IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
intraflagellar transport protein 56
Names
tetratricopeptide repeat domain 26

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041756.1 Reference Mmul_10 Primary Assembly

    Range
    165553663..165617383
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001106020.4 → XP_001106020.2  intraflagellar transport protein 56 isoform X1

    See identical proteins and their annotated locations for XP_001106020.2

    UniProtKB/TrEMBL
    A0A1D5Q9K7, G7MMM8
    Related
    ENSMMUP00000044725.2, ENSMMUT00000060796.2
    Conserved Domains (2) summary
    TIGR02917
    Location:33 → 346
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:58 → 86
    TPR; TPR repeat [structural motif]

  2. XM_028846362.1 → XP_028702195.1  intraflagellar transport protein 56 isoform X2

    UniProtKB/TrEMBL
    G7MMM8
    Conserved Domains (3) summary
    TIGR02917
    Location:121 → 309
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:24 → 49
    TPR; TPR repeat [structural motif]
    pfam14559
    Location:30 → 75
    TPR_19; Tetratricopeptide repeat
Nucleotide Protein
Heading Accession and Version

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