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HAVCR1 hepatitis A virus cellular receptor 1 [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 715333, updated on 5-Mar-2024

Summary

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Gene symbol
HAVCR1
Gene description
hepatitis A virus cellular receptor 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Also known as
TIM1
Orthologs
human all
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Genomic context

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See HAVCR1 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
9
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 6 NC_041759.1 (154438277..154469332, complement)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 6 NC_027898.1 (155182645..155213241, complement)

Chromosome 6 - NC_041759.1Genomic Context describing neighboring genes Neighboring gene MICOS complex subunit MIC26 pseudogene Neighboring gene T cell immunoglobulin and mucin domain containing 4 Neighboring gene uncharacterized LOC106999005 Neighboring gene hepatitis A virus cellular receptor 2 Neighboring gene mediator complex subunit 7

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Lineage-specific evolution of T-cell immunoglobulin and mucin domain 1 gene in the primates. Ohtani H, et al. Immunogenetics, 2012 Sep. PMID 22710823
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables phosphatidylserine binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables virus receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in phagocytosis, engulfment IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of mast cell activation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell surface IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
hepatitis A virus cellular receptor 1
Names
T-cell immunoglobulin and mucin domain-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041759.1 Reference Mmul_10 Primary Assembly

    Range
    154438277..154469332 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028849296.1 → XP_028705129.1  hepatitis A virus cellular receptor 1

    Conserved Domains (2) summary
    PLN03091
    Location:277 → 322
    PLN03091; hypothetical protein; Provisional
    pfam07686
    Location:29 → 116
    V-set; Immunoglobulin V-set domain
Nucleotide Protein
Heading Accession and Version

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Research Materials