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SSBP3 single stranded DNA binding protein 3 [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 715114, updated on 17-Aug-2024

Summary

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Official Symbol
SSBP3provided by VGNC
Official Full Name
single stranded DNA binding protein 3provided by VGNC
Primary source
VGNC:VGNC:77926
See related
Ensembl:ENSMMUG00000020976
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
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Genomic context

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See SSBP3 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
18
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 1 NC_041754.1 (170006842..170187966)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 1 NC_027893.1 (53905211..54089126, complement)

Chromosome 1 - NC_041754.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC114672288 Neighboring gene acyl-CoA thioesterase 11 Neighboring gene heterogeneous nuclear ribonucleoprotein A1-like Neighboring gene uncharacterized LOC114672298 Neighboring gene mitochondrial ribosomal protein L37 Neighboring gene cytochrome b5 reductase like Neighboring gene CUB domain containing protein 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables single-stranded DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
single-stranded DNA-binding protein 3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001261084.1 → NP_001248013.1  single-stranded DNA-binding protein 3

    See identical proteins and their annotated locations for NP_001248013.1

    Status: PROVISIONAL

    Source sequence(s)
    JV046625
    UniProtKB/TrEMBL
    F7HMU8, H9FAK2, H9Z778
    Related
    ENSMMUP00000027603.4, ENSMMUT00000029500.4
    Conserved Domains (2) summary
    smart00667
    Location:17 → 43
    LisH; Lissencephaly type-1-like homology motif
    pfam04503
    Location:81 → 365
    SSDP; Single-stranded DNA binding protein, SSDP

RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041754.1 Reference Mmul_10 Primary Assembly

    Range
    170006842..170187966
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015139547.2 → XP_014995033.1  single-stranded DNA-binding protein 3 isoform X1

    UniProtKB/TrEMBL
    H9FAK2
    Conserved Domains (2) summary
    smart00667
    Location:17 → 43
    LisH; Lissencephaly type-1-like homology motif
    pfam04503
    Location:81 → 373
    SSDP; Single-stranded DNA binding protein, SSDP

  2. XM_015139553.2 → XP_014995039.1  single-stranded DNA-binding protein 3 isoform X2

    UniProtKB/TrEMBL
    A0A5F7ZAU9, H9FAK2
    Related
    ENSMMUP00000062723.1, ENSMMUT00000091849.1
    Conserved Domains (2) summary
    smart00667
    Location:17 → 43
    LisH; Lissencephaly type-1-like homology motif
    pfam04503
    Location:81 → 346
    SSDP; Single-stranded DNA binding protein, SSDP

  3. XM_028845282.1 → XP_028701115.1  single-stranded DNA-binding protein 3 isoform X4

    UniProtKB/TrEMBL
    H9FAK2
    Conserved Domains (2) summary
    smart00667
    Location:17 → 43
    LisH; Lissencephaly type-1-like homology motif
    pfam04503
    Location:81 → 326
    SSDP; Single-stranded DNA binding protein, SSDP

  4. XM_028845288.1 → XP_028701121.1  single-stranded DNA-binding protein 3 isoform X5

    UniProtKB/TrEMBL
    H9FAK2
    Conserved Domains (2) summary
    smart00667
    Location:17 → 43
    LisH; Lissencephaly type-1-like homology motif
    pfam04503
    Location:81 → 318
    SSDP; Single-stranded DNA binding protein, SSDP

  5. XM_015139555.2 → XP_014995041.1  single-stranded DNA-binding protein 3 isoform X3

    UniProtKB/TrEMBL
    F7HMU7, H9FAK2, I0FQG9
    Related
    ENSMMUP00000027604.3, ENSMMUT00000029501.4
    Conserved Domains (2) summary
    smart00667
    Location:17 → 43
    LisH; Lissencephaly type-1-like homology motif
    pfam04503
    Location:81 → 338
    SSDP; Single-stranded DNA binding protein, SSDP
Nucleotide Protein
Heading Accession and Version

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