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SF3B2 splicing factor 3b subunit 2 [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 714747, updated on 17-Aug-2024

Summary

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Official Symbol
SF3B2provided by VGNC
Official Full Name
splicing factor 3b subunit 2provided by VGNC
Primary source
VGNC:VGNC:77180
See related
Ensembl:ENSMMUG00000011743
Gene type
protein coding
RefSeq status
MODEL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
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Genomic context

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See SF3B2 in Genome Data Viewer
Location:
chromosome: 14
Exon count:
22
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 14 NC_041767.1 (8478598..8496217, complement)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 14 NC_027906.1 (8361043..8372383, complement)

Chromosome 14 - NC_041767.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106993189 Neighboring gene kinesin light chain 2 Neighboring gene phosphofurin acidic cluster sorting protein 1 Neighboring gene small nucleolar RNA U13 Neighboring gene small nucleolar RNA U13 Neighboring gene eukaryotic initiation factor 4A-I-like Neighboring gene galactose-3-O-sulfotransferase 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of U12-type spliceosomal complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U2 snRNP IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U2-type spliceosomal complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of catalytic step 2 spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of precatalytic spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
splicing factor 3B subunit 2
Names
splicing factor 3b, subunit 2, 145kDa

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041767.1 Reference Mmul_10 Primary Assembly

    Range
    8478598..8496217 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028833216.1 → XP_028689049.1  splicing factor 3B subunit 2 isoform X1

    UniProtKB/TrEMBL
    A0A1D5RBL4, A0A5S6R7A4, A0A8J8YNU3, F7GWY2, G7NC70
    Related
    ENSMMUP00000015408.4, ENSMMUT00000016447.4
    Conserved Domains (3) summary
    COG5182
    Location:442 → 706
    CUS1; Splicing factor 3b, subunit 2 [RNA processing and modification]
    pfam04037
    Location:471 → 596
    DUF382; Domain of unknown function (DUF382)
    pfam02037
    Location:30 → 57
    SAP; SAP domain

  2. XM_028833219.1 → XP_028689052.1  splicing factor 3B subunit 2 isoform X4

    UniProtKB/TrEMBL
    A0A1D5RBL4
    Conserved Domains (3) summary
    COG5182
    Location:440 → 704
    CUS1; Splicing factor 3b, subunit 2 [RNA processing and modification]
    pfam04037
    Location:469 → 594
    DUF382; Domain of unknown function (DUF382)
    pfam02037
    Location:30 → 57
    SAP; SAP domain

  3. XM_028833218.1 → XP_028689051.1  splicing factor 3B subunit 2 isoform X3

    UniProtKB/TrEMBL
    A0A1D5RBL4
    Conserved Domains (3) summary
    COG5182
    Location:441 → 705
    CUS1; Splicing factor 3b, subunit 2 [RNA processing and modification]
    pfam04037
    Location:470 → 595
    DUF382; Domain of unknown function (DUF382)
    pfam02037
    Location:30 → 57
    SAP; SAP domain

  4. XM_028833217.1 → XP_028689050.1  splicing factor 3B subunit 2 isoform X2

    UniProtKB/TrEMBL
    A0A1D5RBL4
    Conserved Domains (3) summary
    COG5182
    Location:441 → 705
    CUS1; Splicing factor 3b, subunit 2 [RNA processing and modification]
    pfam04037
    Location:470 → 595
    DUF382; Domain of unknown function (DUF382)
    pfam02037
    Location:30 → 57
    SAP; SAP domain
Nucleotide Protein
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