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PROM1 prominin 1 [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 714610, updated on 17-Aug-2024

Summary

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Official Symbol
PROM1provided by VGNC
Official Full Name
prominin 1provided by VGNC
Primary source
VGNC:VGNC:76425
See related
Ensembl:ENSMMUG00000008164
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
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Genomic context

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See PROM1 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
34
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 5 NC_041758.1 (14968132..15124022, complement)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 5 NC_027897.1 (15288637..15444390, complement)

Chromosome 5 - NC_041758.1Genomic Context describing neighboring genes Neighboring gene fibroblast growth factor binding protein 1 Neighboring gene fibroblast growth factor binding protein 2 Neighboring gene U6 spliceosomal RNA Neighboring gene transmembrane anterior posterior transformation 1 Neighboring gene basic proline-rich protein-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Isolation, molecular cloning and in vitro expression of rhesus monkey (Macaca mulatta) prominin-1.s1 complementary DNA encoding a potential hematopoietic stem cell antigen. Husain SM, et al. Tissue Antigens, 2006 Oct. PMID 17026467
  2. Nomenclature of prominin-1 (CD133) splice variants - an update. Fargeas CA, et al. Tissue Antigens, 2007 Jun. PMID 17498271
  3. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. First published report of isolation of potential hematopoietic stem cell marker prominin-1 cDNA from rhesus monkey.
    Title: Isolation, molecular cloning and in vitro expression of rhesus monkey (Macaca mulatta) prominin-1.s1 complementary DNA encoding a potential hematopoietic stem cell antigen.
Submit: New GeneRIF Correction

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cholesterol binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in apical plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cell surface IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cilium IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in microvillus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in prominosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
prominin-1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001077420.1 → NP_001070888.1  prominin-1 precursor

    See identical proteins and their annotated locations for NP_001070888.1

    Status: PROVISIONAL

    Source sequence(s)
    AY903606
    UniProtKB/TrEMBL
    G7MSM0, Q05EC9
    Related
    ENSMMUP00000035408.3, ENSMMUT00000042406.3
    Conserved Domains (1) summary
    pfam05478
    Location:18 → 820
    Prominin; Prominin

RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041758.1 Reference Mmul_10 Primary Assembly

    Range
    14968132..15124022 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015138021.2 → XP_014993507.1  prominin-1 isoform X2

    UniProtKB/TrEMBL
    A0A5F8AJ98, F7DVV0
    Related
    ENSMMUP00000077096.1, ENSMMUT00000089829.1
    Conserved Domains (1) summary
    pfam05478
    Location:18 → 811
    Prominin; Prominin

  2. XM_028848134.1 → XP_028703967.1  prominin-1 isoform X3

    UniProtKB/TrEMBL
    F7DVU4, G7MSM0
    Conserved Domains (1) summary
    pfam05478
    Location:18 → 820
    Prominin

  3. XM_015138022.2 → XP_014993508.1  prominin-1 isoform X2

    UniProtKB/TrEMBL
    A0A5F8AJ98, F7DVV0
    Related
    ENSMMUP00000035407.3, ENSMMUT00000042405.3
    Conserved Domains (1) summary
    pfam05478
    Location:18 → 811
    Prominin; Prominin

  4. XM_015138019.2 → XP_014993505.1  prominin-1 isoform X1

    UniProtKB/TrEMBL
    G7MSM0
    Conserved Domains (1) summary
    pfam05478
    Location:18 → 820
    Prominin

  5. XM_015138018.2 → XP_014993504.1  prominin-1 isoform X1

    UniProtKB/TrEMBL
    G7MSM0
    Conserved Domains (1) summary
    pfam05478
    Location:18 → 820
    Prominin

  6. XM_015138028.2 → XP_014993514.1  prominin-1 isoform X7

    UniProtKB/TrEMBL
    A0A5F8AJ98, A0A5F8AP11
    Related
    ENSMMUP00000078813.1, ENSMMUT00000082553.1
    Conserved Domains (1) summary
    pfam05478
    Location:18 → 811
    Prominin

  7. XM_015138027.2 → XP_014993513.1  prominin-1 isoform X6

    UniProtKB/TrEMBL
    A0A5F8A3C4, A0A5F8AJ98
    Related
    ENSMMUP00000071861.1, ENSMMUT00000090572.1
    Conserved Domains (1) summary
    pfam05478
    Location:18 → 811
    Prominin; Prominin

  8. XM_015138020.2 → XP_014993506.1  prominin-1 isoform X1

    UniProtKB/TrEMBL
    G7MSM0
    Conserved Domains (1) summary
    pfam05478
    Location:18 → 820
    Prominin

  9. XM_028848133.1 → XP_028703966.1  prominin-1 isoform X1

    UniProtKB/TrEMBL
    G7MSM0
    Conserved Domains (1) summary
    pfam05478
    Location:18 → 820
    Prominin

  10. XM_028848136.1 → XP_028703969.1  prominin-1 isoform X5

    UniProtKB/TrEMBL
    G7MSM0
    Conserved Domains (1) summary
    pfam05478
    Location:18 → 820
    Prominin

  11. XM_028848135.1 → XP_028703968.1  prominin-1 isoform X4

    UniProtKB/TrEMBL
    G7MSM0
    Conserved Domains (1) summary
    pfam05478
    Location:18 → 820
    Prominin
Nucleotide Protein
Heading Accession and Version

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