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SPIDR scaffold protein involved in DNA repair [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 714523, updated on 17-Aug-2024

Summary

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Official Symbol
SPIDRprovided by VGNC
Official Full Name
scaffold protein involved in DNA repairprovided by VGNC
Primary source
VGNC:VGNC:84118
See related
Ensembl:ENSMMUG00000013149
Gene type
protein coding
RefSeq status
MODEL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
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Genomic context

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See SPIDR in Genome Data Viewer
Location:
chromosome: 8
Exon count:
27
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 8 NC_041761.1 (47804108..48286358)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 8 NC_027900.1 (44857932..45188617)

Chromosome 8 - NC_041761.1Genomic Context describing neighboring genes Neighboring gene dihydrofolate reductase pseudogene Neighboring gene V-type proton ATPase subunit G 1 pseudogene Neighboring gene NSFL1 cofactor p47 pseudogene Neighboring gene 40S ribosomal protein S4, X isoform-like Neighboring gene U6 spliceosomal RNA Neighboring gene CCAAT enhancer binding protein delta Neighboring gene protein kinase, DNA-activated, catalytic subunit

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in double-strand break repair via homologous recombination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of establishment of protein localization to chromosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nuclear chromosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
DNA repair-scaffolding protein
Names
scaffolding protein involved in DNA repair

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041761.1 Reference Mmul_10 Primary Assembly

    Range
    47804108..48286358
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028852651.1 → XP_028708484.1  DNA repair-scaffolding protein isoform X1

    UniProtKB/TrEMBL
    A0A1D5R5F9, G7MZ92
    Related
    ENSMMUP00000055546.2, ENSMMUT00000056820.2
    Conserved Domains (2) summary
    pfam14950
    Location:11 → 394
    DUF4502; Domain of unknown function (DUF4502)
    pfam14951
    Location:546 → 930
    DUF4503; Domain of unknown function (DUF4503)

  2. XM_028852653.1 → XP_028708486.1  DNA repair-scaffolding protein isoform X3

    UniProtKB/TrEMBL
    G7MZ92
    Conserved Domains (2) summary
    pfam14950
    Location:11 → 394
    DUF4502; Domain of unknown function (DUF4502)
    pfam14951
    Location:546 → 845
    DUF4503; Domain of unknown function (DUF4503)

  3. XM_028852652.1 → XP_028708485.1  DNA repair-scaffolding protein isoform X2

    UniProtKB/TrEMBL
    F6Z8R6, G7MZ92
    Related
    ENSMMUP00000017275.4, ENSMMUT00000018449.4
    Conserved Domains (2) summary
    pfam14950
    Location:11 → 394
    DUF4502; Domain of unknown function (DUF4502)
    pfam14951
    Location:546 → 805
    DUF4503; Domain of unknown function (DUF4503)

  4. XM_028852655.1 → XP_028708488.1  DNA repair-scaffolding protein isoform X5

    Conserved Domains (2) summary
    pfam14950
    Location:5 → 119
    DUF4502; Domain of unknown function (DUF4502)
    pfam14951
    Location:271 → 655
    DUF4503; Domain of unknown function (DUF4503)

  5. XM_028852654.1 → XP_028708487.1  DNA repair-scaffolding protein isoform X4

    UniProtKB/TrEMBL
    G7MZ92
    Conserved Domains (2) summary
    pfam14950
    Location:2 → 195
    DUF4502; Domain of unknown function (DUF4502)
    pfam14951
    Location:347 → 731
    DUF4503; Domain of unknown function (DUF4503)

  6. XM_015145324.2 → XP_015000810.2  DNA repair-scaffolding protein isoform X6

    Conserved Domains (2) summary
    pfam14950
    Location:40 → 118
    DUF4502; Domain of unknown function (DUF4502)
    pfam14951
    Location:270 → 654
    DUF4503; Domain of unknown function (DUF4503)

  7. XM_028852658.1 → XP_028708491.1  DNA repair-scaffolding protein isoform X9

    Conserved Domains (1) summary
    pfam14951
    Location:24 → 408
    DUF4503; Domain of unknown function (DUF4503)

  8. XM_028852656.1 → XP_028708489.1  DNA repair-scaffolding protein isoform X7

    Conserved Domains (1) summary
    pfam14951
    Location:59 → 443
    DUF4503; Domain of unknown function (DUF4503)

  9. XM_028852660.1 → XP_028708493.1  DNA repair-scaffolding protein isoform X11

    Conserved Domains (1) summary
    pfam14951
    Location:26 → 410
    DUF4503; Domain of unknown function (DUF4503)

  10. XM_028852657.1 → XP_028708490.1  DNA repair-scaffolding protein isoform X8

    Conserved Domains (1) summary
    pfam14951
    Location:38 → 422
    DUF4503; Domain of unknown function (DUF4503)

  11. XM_028852659.1 → XP_028708492.1  DNA repair-scaffolding protein isoform X10

    Conserved Domains (1) summary
    pfam14951
    Location:1 → 380
    DUF4503; Domain of unknown function (DUF4503)
Nucleotide Protein
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