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SRBD1 S1 RNA binding domain 1 [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 714485, updated on 17-Aug-2024

Summary

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Official Symbol
SRBD1provided by VGNC
Official Full Name
S1 RNA binding domain 1provided by VGNC
Primary source
VGNC:VGNC:106226
See related
Ensembl:ENSMMUG00000003490
Gene type
protein coding
RefSeq status
MODEL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
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Genomic context

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See SRBD1 in Genome Data Viewer
Location:
chromosome: 13
Exon count:
21
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 13 NC_041766.1 (63190270..63405839)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 13 NC_027905.1 (46122417..46337394, complement)

Chromosome 13 - NC_041766.1Genomic Context describing neighboring genes Neighboring gene protein kinase C epsilon Neighboring gene uncharacterized LOC114671721 Neighboring gene acyl transferase 8-like Neighboring gene uncharacterized LOC114671722 Neighboring gene SIX homeobox 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of ribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in nucleobase-containing compound metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in translation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
S1 RNA-binding domain-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041766.1 Reference Mmul_10 Primary Assembly

    Range
    63190270..63405839
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015112279.2 → XP_014967765.1  S1 RNA-binding domain-containing protein 1

    UniProtKB/TrEMBL
    F7E7F1, H9ZAP0
    Related
    ENSMMUP00000004654.3, ENSMMUT00000004941.4
    Conserved Domains (5) summary
    COG2183
    Location:209 → 990
    Tex; Transcriptional accessory protein Tex/SPT6 [Transcription]
    cd05685
    Location:918 → 989
    S1_Tex; S1_Tex: The C-terminal S1 domain of a transcription accessory factor called Tex, which has been characterized in Bordetella pertussis and Pseudomonas aeruginosa. The tex gene is essential in Bortella pertusis and is named for its role in toxin expression. ...
    pfam09371
    Location:218 → 413
    Tex_N; Tex-like protein N-terminal domain
    pfam12836
    Location:704 → 766
    HHH_3; Helix-hairpin-helix motif
    pfam16921
    Location:537 → 662
    Tex_YqgF; Tex protein YqgF-like domain
Nucleotide Protein
Heading Accession and Version

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