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PLS1 plastin 1 [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 714391, updated on 17-Aug-2024

Summary

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Official Symbol
PLS1provided by VGNC
Official Full Name
plastin 1provided by VGNC
Primary source
VGNC:VGNC:110348
Locus tag
EGK_16391
See related
Ensembl:ENSMMUG00000055990
Gene type
protein coding
RefSeq status
MODEL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
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Genomic context

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See PLS1 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
17
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 2 NC_041755.1 (44714280..44825884)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 2 NC_027894.1 (159146831..159275672, complement)

Chromosome 2 - NC_041755.1Genomic Context describing neighboring genes Neighboring gene 5'-3' exoribonuclease 1 Neighboring gene U1 spliceosomal RNA Neighboring gene eukaryotic translation initiation factor 2-alpha kinase 1 pseudogene Neighboring gene ATR serine/threonine kinase Neighboring gene transient receptor potential cation channel subfamily C member 1 Neighboring gene U7 small nuclear RNA Neighboring gene 60S ribosomal protein L8 pseudogene Neighboring gene procollagen C-endopeptidase enhancer 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques. Yan G, et al. Nat Biotechnol, 2011 Oct 16. PMID 22002653
  2. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables actin filament binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in actin filament bundle assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in actin filament network formation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in actin filament IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in actin filament bundle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
plastin-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041755.1 Reference Mmul_10 Primary Assembly

    Range
    44714280..44825884
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028843750.1 → XP_028699583.1  plastin-1 isoform X1

    UniProtKB/TrEMBL
    A0A5F7ZDD0, A0A8J8Y327, F7EA87
    Related
    ENSMMUP00000062644.1, ENSMMUT00000098220.1
    Conserved Domains (3) summary
    COG5069
    Location:13 → 621
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    cd21323
    Location:100 → 244
    CH_PLS1_rpt1; first calponin homology (CH) domain found in plastin-1
    cd21329
    Location:391 → 508
    CH_PLS1_rpt3; third calponin homology (CH) domain found in plastin-1

  2. XM_028843751.1 → XP_028699584.1  plastin-1 isoform X2

    Conserved Domains (1) summary
    COG5069
    Location:13 → 546
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]

  3. XM_028843752.1 → XP_028699585.1  plastin-1 isoform X3

    Conserved Domains (1) summary
    COG5069
    Location:13 → 547
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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