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TRPC1 transient receptor potential cation channel subfamily C member 1 [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 714334, updated on 17-Aug-2024

Summary

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Official Symbol
TRPC1provided by VGNC
Official Full Name
transient receptor potential cation channel subfamily C member 1provided by VGNC
Primary source
VGNC:VGNC:78651
See related
Ensembl:ENSMMUG00000012405
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
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Genomic context

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See TRPC1 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
15
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 2 NC_041755.1 (44836535..44919096)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 2 NC_027894.1 (159054277..159136578, complement)

Chromosome 2 - NC_041755.1Genomic Context describing neighboring genes Neighboring gene eukaryotic translation initiation factor 2-alpha kinase 1 pseudogene Neighboring gene ATR serine/threonine kinase Neighboring gene plastin 1 Neighboring gene U7 small nuclear RNA Neighboring gene 60S ribosomal protein L8 pseudogene Neighboring gene procollagen C-endopeptidase enhancer 2 Neighboring gene uncharacterized LOC106997091

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables inositol 1,4,5 trisphosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables store-operated calcium channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in calcium ion transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in manganese ion transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cytosolic calcium ion concentration IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of cation channel complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
short transient receptor potential channel 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001260937.1 → NP_001247866.1  short transient receptor potential channel 1

    See identical proteins and their annotated locations for NP_001247866.1

    Status: PROVISIONAL

    Source sequence(s)
    JU336174
    UniProtKB/TrEMBL
    A0A5F7ZI95, H9FZ68
    Related
    ENSMMUP00000064356.1, ENSMMUT00000102975.1
    Conserved Domains (2) summary
    TIGR00870
    Location:47 → 739
    trp; transient-receptor-potential calcium channel protein
    sd00045
    Location:82 → 116
    ANK; ANK repeat [structural motif]

RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041755.1 Reference Mmul_10 Primary Assembly

    Range
    44836535..44919096
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015131919.2 → XP_014987405.1  short transient receptor potential channel 1 isoform X1

    UniProtKB/TrEMBL
    F7EA78
    Related
    ENSMMUP00000016288.3, ENSMMUT00000017393.4
    Conserved Domains (1) summary
    TIGR00870
    Location:98 → 814
    trp; transient-receptor-potential calcium channel protein

  2. XM_015131921.2 → XP_014987407.1  short transient receptor potential channel 1 isoform X2

    UniProtKB/TrEMBL
    F7EA78
    Conserved Domains (2) summary
    TIGR00870
    Location:98 → 780
    trp; transient-receptor-potential calcium channel protein
    sd00045
    Location:77 → 121
    ANK; ANK repeat [structural motif]

  3. XM_015131922.2 → XP_014987408.1  short transient receptor potential channel 1 isoform X3

    UniProtKB/TrEMBL
    F7EA78
    Conserved Domains (1) summary
    TIGR00870
    Location:47 → 773
    trp; transient-receptor-potential calcium channel protein

  4. XM_015131924.2 → XP_014987410.1  short transient receptor potential channel 1 isoform X5

    UniProtKB/TrEMBL
    G7MJL4
    Conserved Domains (1) summary
    TIGR00870
    Location:25 → 642
    trp; transient-receptor-potential calcium channel protein

  5. XM_028843365.1 → XP_028699198.1  short transient receptor potential channel 1 isoform X6

    UniProtKB/TrEMBL
    G7MJL4
    Conserved Domains (1) summary
    TIGR00870
    Location:61 → 624
    trp; transient-receptor-potential calcium channel protein

  6. XM_015131923.2 → XP_014987409.1  short transient receptor potential channel 1 isoform X4

    UniProtKB/TrEMBL
    A0A5F7ZI95
    Conserved Domains (1) summary
    TIGR00870
    Location:14 → 676
    trp; transient-receptor-potential calcium channel protein

  7. XM_028843363.1 → XP_028699196.1  short transient receptor potential channel 1 isoform X6

    UniProtKB/TrEMBL
    G7MJL4
    Conserved Domains (1) summary
    TIGR00870
    Location:61 → 624
    trp; transient-receptor-potential calcium channel protein

  8. XM_028843364.1 → XP_028699197.1  short transient receptor potential channel 1 isoform X6

    UniProtKB/TrEMBL
    G7MJL4
    Conserved Domains (1) summary
    TIGR00870
    Location:61 → 624
    trp; transient-receptor-potential calcium channel protein
Nucleotide Protein
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