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ATG13 autophagy related 13 [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 714322, updated on 17-Aug-2024

Summary

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Official Symbol
ATG13provided by VGNC
Official Full Name
autophagy related 13provided by VGNC
Primary source
VGNC:VGNC:70148
Locus tag
EGK_06308
See related
Ensembl:ENSMMUG00000019672
Gene type
protein coding
RefSeq status
MODEL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
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Genomic context

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See ATG13 in Genome Data Viewer
Location:
chromosome: 14
Exon count:
21
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 14 NC_041767.1 (19089783..19148472, complement)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 14 NC_027906.1 (19363691..19423197, complement)

Chromosome 14 - NC_041767.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC114672266 Neighboring gene zinc finger protein 408 Neighboring gene Rho GTPase activating protein 1 Neighboring gene harbinger transposase derived 1 Neighboring gene autophagy and beclin 1 regulator 1 Neighboring gene cholinergic receptor muscarinic 4 Neighboring gene midkine

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques. Yan G, et al. Nat Biotechnol, 2011 Oct 16. PMID 22002653
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in autophagosome assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mitophagy IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in piecemeal microautophagy of the nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein localization to phagophore assembly site IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Atg1/ULK1 kinase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extrinsic component of membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in phagophore assembly site IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
autophagy-related protein 13
Names
ATG13 autophagy related 13 homolog
Autophagy-related protein 13

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041767.1 Reference Mmul_10 Primary Assembly

    Range
    19089783..19148472 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001111885.4 → XP_001111885.1  autophagy-related protein 13 isoform X4

    See identical proteins and their annotated locations for XP_001111885.1

    UniProtKB/TrEMBL
    A0A5F7ZJX6, A0A5F7ZRN0, A0A8J8Y0J9, G7NDH0
    Related
    ENSMMUP00000065482.1, ENSMMUT00000108627.1
    Conserved Domains (1) summary
    pfam10033
    Location:19 → 192
    ATG13; Autophagy-related protein 13

  2. XM_001111856.4 → XP_001111856.1  autophagy-related protein 13 isoform X1

    See identical proteins and their annotated locations for XP_001111856.1

    UniProtKB/TrEMBL
    A0A5F7ZJ87, A0A5F7ZRN0
    Conserved Domains (1) summary
    pfam10033
    Location:19 → 192
    ATG13; Autophagy-related protein 13

  3. XM_028833475.1 → XP_028689308.1  autophagy-related protein 13 isoform X9

    UniProtKB/TrEMBL
    A0A5F7Z802, A0A5F8AKT1
    Related
    ENSMMUP00000078524.1, ENSMMUT00000086484.1
    Conserved Domains (1) summary
    pfam10033
    Location:19 → 192
    ATG13; Autophagy-related protein 13

  4. XM_001111708.4 → XP_001111708.1  autophagy-related protein 13 isoform X8

    See identical proteins and their annotated locations for XP_001111708.1

    UniProtKB/TrEMBL
    A0A5F7Z802, F6T0F9, F6T0G8, F7CMI5
    Related
    ENSMMUP00000037124.1, ENSMMUT00000044118.3
    Conserved Domains (1) summary
    pfam10033
    Location:19 → 192
    ATG13; Autophagy-related protein 13

  5. XM_028833473.1 → XP_028689306.1  autophagy-related protein 13 isoform X6

    UniProtKB/TrEMBL
    A0A5F7ZRN0
    Conserved Domains (1) summary
    pfam10033
    Location:19 → 195
    ATG13; Autophagy-related protein 13

  6. XM_028833474.1 → XP_028689307.1  autophagy-related protein 13 isoform X7

    UniProtKB/TrEMBL
    A0A5F7ZRN0
    Conserved Domains (1) summary
    pfam10033
    Location:19 → 192
    ATG13; Autophagy-related protein 13

  7. XM_002799565.3 → XP_002799611.1  autophagy-related protein 13 isoform X4

    See identical proteins and their annotated locations for XP_002799611.1

    UniProtKB/TrEMBL
    A0A5F7ZJX6, A0A5F7ZRN0, A0A8J8Y0J9, G7NDH0
    Conserved Domains (1) summary
    pfam10033
    Location:19 → 192
    ATG13; Autophagy-related protein 13

  8. XM_028833471.1 → XP_028689304.1  autophagy-related protein 13 isoform X2

    UniProtKB/TrEMBL
    A0A5F7ZRN0
    Conserved Domains (1) summary
    pfam10033
    Location:19 → 192
    ATG13; Autophagy-related protein 13

  9. XM_028833472.1 → XP_028689305.1  autophagy-related protein 13 isoform X5

    UniProtKB/TrEMBL
    A0A5F7ZRN0
    Conserved Domains (1) summary
    pfam10033
    Location:19 → 195
    ATG13; Autophagy-related protein 13

  10. XM_015114373.2 → XP_014969859.1  autophagy-related protein 13 isoform X3

    UniProtKB/TrEMBL
    A0A5F7ZRN0
    Conserved Domains (1) summary
    pfam10033
    Location:19 → 192
    ATG13; Autophagy-related protein 13

  11. XM_015114363.2 → XP_014969849.1  autophagy-related protein 13 isoform X1

    UniProtKB/TrEMBL
    A0A5F7ZJ87, A0A5F7ZRN0
    Related
    ENSMMUP00000065241.1, ENSMMUT00000081604.1
    Conserved Domains (1) summary
    pfam10033
    Location:19 → 192
    ATG13; Autophagy-related protein 13

  12. XM_015114364.2 → XP_014969850.1  autophagy-related protein 13 isoform X1

    UniProtKB/TrEMBL
    A0A5F7ZJ87, A0A5F7ZRN0
    Conserved Domains (1) summary
    pfam10033
    Location:19 → 192
    ATG13; Autophagy-related protein 13

  13. XM_015114366.2 → XP_014969852.1  autophagy-related protein 13 isoform X1

    UniProtKB/TrEMBL
    A0A5F7ZJ87, A0A5F7ZRN0
    Conserved Domains (1) summary
    pfam10033
    Location:19 → 192
    ATG13; Autophagy-related protein 13

  14. XM_015114365.2 → XP_014969851.1  autophagy-related protein 13 isoform X1

    UniProtKB/TrEMBL
    A0A5F7ZJ87, A0A5F7ZRN0
    Conserved Domains (1) summary
    pfam10033
    Location:19 → 192
    ATG13; Autophagy-related protein 13

  15. XM_015114367.2 → XP_014969853.1  autophagy-related protein 13 isoform X1

    UniProtKB/TrEMBL
    A0A5F7ZJ87, A0A5F7ZRN0
    Conserved Domains (1) summary
    pfam10033
    Location:19 → 192
    ATG13; Autophagy-related protein 13
Nucleotide Protein
Heading Accession and Version

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