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LHX1 LIM homeobox 1 [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 714101, updated on 17-Aug-2024

Summary

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Official Symbol
LHX1provided by VGNC
Official Full Name
LIM homeobox 1provided by VGNC
Primary source
VGNC:VGNC:82173
Locus tag
EGK_08621
See related
Ensembl:ENSMMUG00000021668
Gene type
protein coding
RefSeq status
MODEL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
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Genomic context

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See LHX1 in Genome Data Viewer
Location:
chromosome: 16
Exon count:
5
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 16 NC_041769.1 (34167029..34174803, complement)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 16 NC_027908.1 (42948347..42956119)

Chromosome 16 - NC_041769.1Genomic Context describing neighboring genes Neighboring gene acetyl-CoA carboxylase alpha Neighboring gene uncharacterized LOC106994023 Neighboring gene apoptosis antagonizing transcription factor Neighboring gene uncharacterized LOC106994020 Neighboring gene uncharacterized LOC114673110 Neighboring gene uncharacterized LOC114673111

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in neuron differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LIM/homeobox protein Lhx1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041769.1 Reference Mmul_10 Primary Assembly

    Range
    34167029..34174803 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015119459.2 → XP_014974945.1  LIM/homeobox protein Lhx1

    UniProtKB/TrEMBL
    A0A5F7ZU36, A0A5S6RCI3, A0A8J8XTP5, F7F4Z5, G7NI09
    Related
    ENSMMUP00000062768.1, ENSMMUT00000092712.1
    Conserved Domains (4) summary
    cd09367
    Location:4 → 55
    LIM1_Lhx1_Lhx5; The first LIM domain of Lhx1 (also known as Lim1) and Lhx5
    cd09375
    Location:63 → 118
    LIM2_Lhx1_Lhx5; The second LIM domain of Lhx1 (also known as Lim1) and Lhx5
    PRK14086
    Location:263 → 382
    dnaA; chromosomal replication initiator protein DnaA
    pfam00046
    Location:183 → 237
    Homeobox; Homeobox domain

  2. XM_028836227.1 → XP_028692060.1  LIM/homeobox protein Lhx1

    UniProtKB/TrEMBL
    A0A5F7ZU36, A0A5S6RCI3, A0A8J8XTP5, F7F4Z5, G7NI09
    Related
    ENSMMUP00000028533.4, ENSMMUT00000030491.4
    Conserved Domains (4) summary
    cd09367
    Location:4 → 55
    LIM1_Lhx1_Lhx5; The first LIM domain of Lhx1 (also known as Lim1) and Lhx5
    cd09375
    Location:63 → 118
    LIM2_Lhx1_Lhx5; The second LIM domain of Lhx1 (also known as Lim1) and Lhx5
    PRK14086
    Location:263 → 382
    dnaA; chromosomal replication initiator protein DnaA
    pfam00046
    Location:183 → 237
    Homeobox; Homeobox domain

  3. XM_028836226.1 → XP_028692059.1  LIM/homeobox protein Lhx1

    UniProtKB/TrEMBL
    A0A5F7ZU36, A0A5S6RCI3, A0A8J8XTP5, F7F4Z5, G7NI09
    Conserved Domains (4) summary
    cd09367
    Location:4 → 55
    LIM1_Lhx1_Lhx5; The first LIM domain of Lhx1 (also known as Lim1) and Lhx5
    cd09375
    Location:63 → 118
    LIM2_Lhx1_Lhx5; The second LIM domain of Lhx1 (also known as Lim1) and Lhx5
    PRK14086
    Location:263 → 382
    dnaA; chromosomal replication initiator protein DnaA
    pfam00046
    Location:183 → 237
    Homeobox; Homeobox domain
Nucleotide Protein
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