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SEMA6D semaphorin 6D [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 713885, updated on 17-Aug-2024

Summary

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Official Symbol
SEMA6Dprovided by VGNC
Official Full Name
semaphorin 6Dprovided by VGNC
Primary source
VGNC:VGNC:77250
See related
Ensembl:ENSMMUG00000012144
Gene type
protein coding
RefSeq status
MODEL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
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Genomic context

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See SEMA6D in Genome Data Viewer
Location:
chromosome: 7
Exon count:
30
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 7 NC_041760.1 (23594566..24184027)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 7 NC_027899.1 (24030802..24086997)

Chromosome 7 - NC_041760.1Genomic Context describing neighboring genes Neighboring gene small ubiquitin-related modifier 2 Neighboring gene cytochrome b5 type B pseudogene Neighboring gene uncharacterized LOC106999172 Neighboring gene ribosomal protein L7-like 1-like Neighboring gene solute carrier family 24 member 5 Neighboring gene myelin expression factor 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chemorepellent activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables semaphorin receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative chemotaxis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of axon extension involved in axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in neural crest cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in semaphorin-plexin signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
semaphorin-6D

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041760.1 Reference Mmul_10 Primary Assembly

    Range
    23594566..24184027
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028850891.1 → XP_028706724.1  semaphorin-6D isoform X7

    UniProtKB/TrEMBL
    H9ETN5
    Conserved Domains (2) summary
    cd11269
    Location:49 → 513
    Sema_6D; The Sema domain, a protein interacting module, of semaphorin 6D (Sema6D)
    pfam01437
    Location:514 → 543
    PSI; Plexin repeat

  2. XM_028850881.1 → XP_028706714.1  semaphorin-6D isoform X1

    UniProtKB/TrEMBL
    F7GXZ9, H9ETV0, H9G018
    Conserved Domains (2) summary
    cd11269
    Location:49 → 513
    Sema_6D; The Sema domain, a protein interacting module, of semaphorin 6D (Sema6D)
    pfam01437
    Location:514 → 543
    PSI; Plexin repeat

  3. XM_028850882.1 → XP_028706715.1  semaphorin-6D isoform X1

    UniProtKB/TrEMBL
    F7GXZ9, H9ETV0, H9G018
    Conserved Domains (2) summary
    cd11269
    Location:49 → 513
    Sema_6D; The Sema domain, a protein interacting module, of semaphorin 6D (Sema6D)
    pfam01437
    Location:514 → 543
    PSI; Plexin repeat

  4. XM_028850884.1 → XP_028706717.1  semaphorin-6D isoform X1

    UniProtKB/TrEMBL
    F7GXZ9, H9ETV0, H9G018
    Related
    ENSMMUP00000015938.4, ENSMMUT00000017017.4
    Conserved Domains (2) summary
    cd11269
    Location:49 → 513
    Sema_6D; The Sema domain, a protein interacting module, of semaphorin 6D (Sema6D)
    pfam01437
    Location:514 → 543
    PSI; Plexin repeat

  5. XM_015142152.2 → XP_014997638.2  semaphorin-6D isoform X1

    UniProtKB/TrEMBL
    F7GXZ9, H9ETV0, H9G018
    Conserved Domains (2) summary
    cd11269
    Location:49 → 513
    Sema_6D; The Sema domain, a protein interacting module, of semaphorin 6D (Sema6D)
    pfam01437
    Location:514 → 543
    PSI; Plexin repeat

  6. XM_028850888.1 → XP_028706721.1  semaphorin-6D isoform X5

    UniProtKB/TrEMBL
    H9ETN5
    Conserved Domains (2) summary
    cd11269
    Location:49 → 513
    Sema_6D; The Sema domain, a protein interacting module, of semaphorin 6D (Sema6D)
    pfam01437
    Location:514 → 543
    PSI; Plexin repeat

  7. XM_028850886.1 → XP_028706719.1  semaphorin-6D isoform X3

    UniProtKB/TrEMBL
    H9ETV0
    Conserved Domains (2) summary
    cd11269
    Location:49 → 513
    Sema_6D; The Sema domain, a protein interacting module, of semaphorin 6D (Sema6D)
    pfam01437
    Location:514 → 543
    PSI; Plexin repeat

  8. XM_028850890.1 → XP_028706723.1  semaphorin-6D isoform X7

    UniProtKB/TrEMBL
    H9ETN5
    Conserved Domains (2) summary
    cd11269
    Location:49 → 513
    Sema_6D; The Sema domain, a protein interacting module, of semaphorin 6D (Sema6D)
    pfam01437
    Location:514 → 543
    PSI; Plexin repeat

  9. XM_002804757.3 → XP_002804803.3  semaphorin-6D isoform X2

    UniProtKB/TrEMBL
    F7GY03, F7GY18, H9ETV0
    Related
    ENSMMUP00000015932.4, ENSMMUT00000017011.4
    Conserved Domains (3) summary
    cd11269
    Location:49 → 513
    Sema_6D; The Sema domain, a protein interacting module, of semaphorin 6D (Sema6D)
    smart00423
    Location:514 → 543
    PSI; domain found in Plexins, Semaphorins and Integrins
    pfam17061
    Location:931 → 1067
    PARM

  10. XM_028850889.1 → XP_028706722.1  semaphorin-6D isoform X6

    UniProtKB/TrEMBL
    A0A5F8A7V5, H9ETN5
    Related
    ENSMMUP00000072995.1, ENSMMUT00000091290.1
    Conserved Domains (3) summary
    cd11269
    Location:49 → 513
    Sema_6D; The Sema domain, a protein interacting module, of semaphorin 6D (Sema6D)
    smart00423
    Location:514 → 543
    PSI; domain found in Plexins, Semaphorins and Integrins
    pfam17061
    Location:875 → 1011
    PARM

  11. XM_028850887.1 → XP_028706720.1  semaphorin-6D isoform X4

    UniProtKB/TrEMBL
    F7GY14, H9ETV0
    Related
    ENSMMUP00000015933.4, ENSMMUT00000017012.4
    Conserved Domains (3) summary
    cd11269
    Location:49 → 513
    Sema_6D; The Sema domain, a protein interacting module, of semaphorin 6D (Sema6D)
    smart00423
    Location:514 → 543
    PSI; domain found in Plexins, Semaphorins and Integrins
    pfam17061
    Location:912 → 1048
    PARM

  12. XM_028850892.1 → XP_028706725.1  semaphorin-6D isoform X8

    UniProtKB/TrEMBL
    H9ETN5, I2CTC3
    Related
    ENSMMUP00000079824.1, ENSMMUT00000087038.1
    Conserved Domains (3) summary
    cd11269
    Location:49 → 513
    Sema_6D; The Sema domain, a protein interacting module, of semaphorin 6D (Sema6D)
    smart00423
    Location:514 → 543
    PSI; domain found in Plexins, Semaphorins and Integrins
    pfam17061
    Location:856 → 992
    PARM

  13. XM_028850883.1 → XP_028706716.1  semaphorin-6D isoform X1

    UniProtKB/TrEMBL
    F7GXZ9, H9ETV0, H9G018
    Conserved Domains (2) summary
    cd11269
    Location:49 → 513
    Sema_6D; The Sema domain, a protein interacting module, of semaphorin 6D (Sema6D)
    pfam01437
    Location:514 → 543
    PSI; Plexin repeat

  14. XM_015142151.2 → XP_014997637.2  semaphorin-6D isoform X1

    UniProtKB/TrEMBL
    F7GXZ9, H9ETV0, H9G018
    Conserved Domains (2) summary
    cd11269
    Location:49 → 513
    Sema_6D; The Sema domain, a protein interacting module, of semaphorin 6D (Sema6D)
    pfam01437
    Location:514 → 543
    PSI; Plexin repeat

  15. XM_001112444.4 → XP_001112444.3  semaphorin-6D isoform X7

    UniProtKB/TrEMBL
    H9ETN5
    Conserved Domains (2) summary
    cd11269
    Location:49 → 513
    Sema_6D; The Sema domain, a protein interacting module, of semaphorin 6D (Sema6D)
    pfam01437
    Location:514 → 543
    PSI; Plexin repeat

  16. XM_001112236.4 → XP_001112236.3  semaphorin-6D isoform X2

    UniProtKB/TrEMBL
    F7GY03, F7GY18, H9ETV0
    Conserved Domains (3) summary
    cd11269
    Location:49 → 513
    Sema_6D; The Sema domain, a protein interacting module, of semaphorin 6D (Sema6D)
    smart00423
    Location:514 → 543
    PSI; domain found in Plexins, Semaphorins and Integrins
    pfam17061
    Location:931 → 1067
    PARM

  17. XM_015142157.2 → XP_014997643.2  semaphorin-6D isoform X4

    UniProtKB/TrEMBL
    F7GY14, H9ETV0
    Conserved Domains (3) summary
    cd11269
    Location:49 → 513
    Sema_6D; The Sema domain, a protein interacting module, of semaphorin 6D (Sema6D)
    smart00423
    Location:514 → 543
    PSI; domain found in Plexins, Semaphorins and Integrins
    pfam17061
    Location:912 → 1048
    PARM

  18. XM_001112343.4 → XP_001112343.3  semaphorin-6D isoform X6

    UniProtKB/TrEMBL
    A0A5F8A7V5, H9ETN5
    Conserved Domains (3) summary
    cd11269
    Location:49 → 513
    Sema_6D; The Sema domain, a protein interacting module, of semaphorin 6D (Sema6D)
    smart00423
    Location:514 → 543
    PSI; domain found in Plexins, Semaphorins and Integrins
    pfam17061
    Location:875 → 1011
    PARM

  19. XM_001112417.4 → XP_001112417.3  semaphorin-6D isoform X8

    UniProtKB/TrEMBL
    H9ETN5, I2CTC3
    Conserved Domains (3) summary
    cd11269
    Location:49 → 513
    Sema_6D; The Sema domain, a protein interacting module, of semaphorin 6D (Sema6D)
    smart00423
    Location:514 → 543
    PSI; domain found in Plexins, Semaphorins and Integrins
    pfam17061
    Location:856 → 992
    PARM

  20. XM_015142153.2 → XP_014997639.2  semaphorin-6D isoform X1

    UniProtKB/TrEMBL
    F7GXZ9, H9ETV0, H9G018
    Conserved Domains (2) summary
    cd11269
    Location:49 → 513
    Sema_6D; The Sema domain, a protein interacting module, of semaphorin 6D (Sema6D)
    pfam01437
    Location:514 → 543
    PSI; Plexin repeat

  21. XM_028850885.1 → XP_028706718.1  semaphorin-6D isoform X1

    UniProtKB/TrEMBL
    F7GXZ9, H9ETV0, H9G018
    Conserved Domains (2) summary
    cd11269
    Location:49 → 513
    Sema_6D; The Sema domain, a protein interacting module, of semaphorin 6D (Sema6D)
    pfam01437
    Location:514 → 543
    PSI; Plexin repeat

  22. XM_015142154.2 → XP_014997640.2  semaphorin-6D isoform X1

    UniProtKB/TrEMBL
    F7GXZ9, H9ETV0, H9G018
    Conserved Domains (2) summary
    cd11269
    Location:49 → 513
    Sema_6D; The Sema domain, a protein interacting module, of semaphorin 6D (Sema6D)
    pfam01437
    Location:514 → 543
    PSI; Plexin repeat
Nucleotide Protein
Heading Accession and Version

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