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TRIM56 tripartite motif containing 56 [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 713833, updated on 17-Aug-2024

Summary

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Official Symbol
TRIM56provided by VGNC
Official Full Name
tripartite motif containing 56provided by VGNC
Primary source
VGNC:VGNC:79173
Locus tag
EGK_13552
See related
Ensembl:ENSMMUG00000017366
Gene type
protein coding
RefSeq status
MODEL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
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Genomic context

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See TRIM56 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
6
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 3 NC_041756.1 (43215711..43221036)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 3 NC_027895.1 (126530671..126535969)

Chromosome 3 - NC_041756.1Genomic Context describing neighboring genes Neighboring gene mucin-17-like Neighboring gene mucin-17-like Neighboring gene uncharacterized LOC114676877 Neighboring gene serpin family E member 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ubiquitin-protein transferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in innate immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of chromatin IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
E3 ubiquitin-protein ligase TRIM56

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041756.1 Reference Mmul_10 Primary Assembly

    Range
    43215711..43221036
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015134514.2 → XP_014990000.1  E3 ubiquitin-protein ligase TRIM56

    UniProtKB/TrEMBL
    A0A663D8I2, A0A8J8YF63, F7H8Z0, G7MNW5, H9Z0A7
    Conserved Domains (6) summary
    cd00021
    Location:169 → 205
    BBOX; B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction.
    cd05819
    Location:552 → 588
    NHL; NHL repeat [structural motif]
    pfam07111
    Location:193 → 336
    HCR; Alpha helical coiled-coil rod protein (HCR)
    sd00039
    Location:560 → 589
    7WD40; WD40 repeat [structural motif]
    cl18310
    Location:551 → 748
    NHL; NHL repeat unit of beta-propeller proteins
    cd16584
    Location:19 → 60
    RING-HC_TRIM56_C-V; RING finger, HC subclass, found in tripartite motif-containing protein 56 (TRIM56) and similar proteins

  2. XM_001107405.4 → XP_001107405.2  E3 ubiquitin-protein ligase TRIM56

    UniProtKB/TrEMBL
    A0A663D8I2, A0A8J8YF63, F7H8Z0, G7MNW5, H9Z0A7
    Related
    ENSMMUP00000022856.3, ENSMMUT00000024420.4
    Conserved Domains (6) summary
    cd00021
    Location:169 → 205
    BBOX; B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction.
    cd05819
    Location:552 → 588
    NHL; NHL repeat [structural motif]
    pfam07111
    Location:193 → 336
    HCR; Alpha helical coiled-coil rod protein (HCR)
    sd00039
    Location:560 → 589
    7WD40; WD40 repeat [structural motif]
    cl18310
    Location:551 → 748
    NHL; NHL repeat unit of beta-propeller proteins
    cd16584
    Location:19 → 60
    RING-HC_TRIM56_C-V; RING finger, HC subclass, found in tripartite motif-containing protein 56 (TRIM56) and similar proteins

  3. XM_028845614.1 → XP_028701447.1  E3 ubiquitin-protein ligase TRIM56

    UniProtKB/TrEMBL
    A0A663D8I2, A0A8J8YF63, F7H8Z0, G7MNW5, H9Z0A7
    Conserved Domains (6) summary
    cd00021
    Location:169 → 205
    BBOX; B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction.
    cd05819
    Location:552 → 588
    NHL; NHL repeat [structural motif]
    pfam07111
    Location:193 → 336
    HCR; Alpha helical coiled-coil rod protein (HCR)
    sd00039
    Location:560 → 589
    7WD40; WD40 repeat [structural motif]
    cl18310
    Location:551 → 748
    NHL; NHL repeat unit of beta-propeller proteins
    cd16584
    Location:19 → 60
    RING-HC_TRIM56_C-V; RING finger, HC subclass, found in tripartite motif-containing protein 56 (TRIM56) and similar proteins

  4. XM_028845613.1 → XP_028701446.1  E3 ubiquitin-protein ligase TRIM56

    UniProtKB/TrEMBL
    A0A663D8I2, A0A8J8YF63, F7H8Z0, G7MNW5, H9Z0A7
    Conserved Domains (6) summary
    cd00021
    Location:169 → 205
    BBOX; B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction.
    cd05819
    Location:552 → 588
    NHL; NHL repeat [structural motif]
    pfam07111
    Location:193 → 336
    HCR; Alpha helical coiled-coil rod protein (HCR)
    sd00039
    Location:560 → 589
    7WD40; WD40 repeat [structural motif]
    cl18310
    Location:551 → 748
    NHL; NHL repeat unit of beta-propeller proteins
    cd16584
    Location:19 → 60
    RING-HC_TRIM56_C-V; RING finger, HC subclass, found in tripartite motif-containing protein 56 (TRIM56) and similar proteins
Nucleotide Protein
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