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RBFOX1 RNA binding fox-1 homolog 1 [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 713147, updated on 17-Aug-2024

Summary

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Official Symbol
RBFOX1provided by VGNC
Official Full Name
RNA binding fox-1 homolog 1provided by VGNC
Primary source
VGNC:VGNC:76507
Gene type
protein coding
RefSeq status
MODEL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Also known as
A2BP1
Orthologs
human mouse all
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Genomic context

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See RBFOX1 in Genome Data Viewer
Location:
chromosome: 20
Exon count:
21
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 20 NC_041773.1 (5320850..7802213)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 20 NC_027912.1 (5620305..7784292)

Chromosome 20 - NC_041773.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC114674369 Neighboring gene uncharacterized LOC114674368 Neighboring gene nucleophosmin pseudogene Neighboring gene 40S ribosomal protein S3a pseudogene Neighboring gene U1 small nuclear ribonucleoprotein C pseudogene Neighboring gene NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial pseudogene Neighboring gene U6 spliceosomal RNA Neighboring gene U6 spliceosomal RNA Neighboring gene 40S ribosomal protein S26-like Neighboring gene uncharacterized LOC114674371 Neighboring gene small nucleolar RNA SNORA40 Neighboring gene uncharacterized LOC106994938

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in nervous system development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of alternative mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: RNA binding protein fox-1 homolog 1
Names
RNA binding protein, fox-1 homolog 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041773.1 Reference Mmul_10 Primary Assembly

    Range
    5320850..7802213
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028840931.1 → XP_028696764.1  LOW QUALITY PROTEIN: RNA binding protein fox-1 homolog 1

    Conserved Domains (4) summary
    PRK03427
    Location:269 → 401
    PRK03427; cell division protein ZipA; Provisional
    PRK12678
    Location:27 → 194
    PRK12678; transcription termination factor Rho; Provisional
    cd12407
    Location:396 → 471
    RRM_FOX1_like; RNA recognition motif in vertebrate RNA binding protein fox-1 homologs and similar proteins
    pfam12414
    Location:532 → 620
    Fox-1_C; Calcitonin gene-related peptide regulator C terminal
Nucleotide Protein
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