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PDE6D phosphodiesterase 6D [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 712629, updated on 17-Aug-2024

Summary

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Official Symbol
PDE6Dprovided by VGNC
Official Full Name
phosphodiesterase 6Dprovided by VGNC
Primary source
VGNC:VGNC:104548
Locus tag
EGK_04894
See related
Ensembl:ENSMMUG00000064885
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
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Genomic context

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See PDE6D in Genome Data Viewer
Location:
chromosome: 12
Exon count:
5
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 12 NC_041765.1 (119160068..119215366, complement)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 12 NC_027904.1 (114234757..114289976, complement)

Chromosome 12 - NC_041765.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106992764 Neighboring gene U4 spliceosomal RNA Neighboring gene prothymosin alpha Neighboring gene U6 spliceosomal RNA Neighboring gene COP9 signalosome subunit 7B Neighboring gene guanidinoacetate N-methyltransferase pseudogene Neighboring gene natriuretic peptide C

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques. Yan G, et al. Nat Biotechnol, 2011 Oct 16. PMID 22002653
  2. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in sensory perception of light stimulus IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta
Names
phosphodiesterase 6D, cGMP-specific, rod, delta
NP_001181535.1
XP_014966735.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001194606.1 → NP_001181535.1  retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta

    See identical proteins and their annotated locations for NP_001181535.1

    Status: PROVISIONAL

    Source sequence(s)
    QNVO02000079
    UniProtKB/TrEMBL
    A0A5F8ABS5, A0A8J8XXR7, F7BMR1, G7N958
    Related
    ENSMMUP00000070059.1, ENSMMUT00000099798.1
    Conserved Domains (1) summary
    pfam05351
    Location:10 → 149
    GMP_PDE_delta; GMP-PDE, delta subunit

RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041765.1 Reference Mmul_10 Primary Assembly

    Range
    119160068..119215366 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015111249.2 → XP_014966735.1  retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta isoform X1

    UniProtKB/TrEMBL
    A0A5F7ZIE3
    Related
    ENSMMUP00000064406.1, ENSMMUT00000090161.1
    Conserved Domains (1) summary
    pfam05351
    Location:10 → 88
    GMP_PDE_delta; GMP-PDE, delta subunit
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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